Oncorhynchus nerka (sockeye salmon): 115137076
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Entry
115137076 CDS
T07952
Name
(RefSeq) neuronal PAS domain-containing protein 1-like isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115137076
Transcription factors [BR:
one03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
115137076
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
115137076
NCBI-ProteinID:
XP_029528968
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All DBs
Position
LG11:complement(24325160..24363581)
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AA seq
780 aa
AA seq
DB search
MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMCTFASQGDPPWCPLLEGENHCSKVRRSSLSLA
TDMFEQHLGAHLLQSLDGFVFVVSSEGRFLYISETVSIYLGLSQVELMGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHVAPESASSSASTSSLAGSPEPAPSSPLSPGNEPPDRGFF
IRMKSTLTKRGLHVKSSGYKVRVIHVTGRIRCRPAMVPGSARSVRRPMGLVALAHTLPPS
TLNEVRMESQMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDNIRQS
HEDLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYIISRTELPDT
PLDLLQLPESLRAERLKASSSPSELTPQARGPQPMKSSVCKGDPDSKLREIYNPGVQSGD
RRKRPLRSDSEGAPPETRRRLEEFRQREGSVSAASDLGSESEGEERAWEQGGDSARVKRE
EGPSKRGGETPVRGGGVHNGRAVIQHLKSVVSSPLSGPHNIKTEHEALAAGGRWTHTHTS
SHTQPPPSHTHTPCGSLNGDSPPTPIPDSSSSSEAPPKGIFTPPSPAMSPPMSGSSPLPC
EERGMLSGGRVGGPDFELLQRLAAGGAAGRVLFHPLTLGPQGPQSLYAPSTIRYAPPELP
TSHPGAEGLRVDHHKGPPAFFPHLQRLAGLPSFSGFSASDNPFNPFCMNGLRGAAGSEED
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccatgccgttcgtcagcgagggaaagtgtgtgagcgtggagtgggacttccta
cagggactactggccaaaccccccaccctgccctgtttgcagaacctgcggaaggagaag
tctcgtaatgccgctcgttcccgtcgcggcaaggagaactttgagttctttgagctggcc
aagatgctccctctccccggggctatcaccagccagctggacaaggcctcggtcattcgc
ctcaccatcagctacttgcacatgtgcaccttcgccagccagggagacccgccctggtgc
cccctgctggagggagagaaccactgcagcaaagtgcgacgctcctccctctctctggct
actgacatgtttgaacagcacctgggagcacacctgttacagtctctggacggctttgtg
tttgtggtaagctcagagggacgattcctctacatatcagagactgtttccatctacctg
ggcctctcacaggtggagttgatgggcagcagtgtgtttgactacatccacccagcggac
catgtggagatggctgagcgtctgggcatcaggccccacctgagggctgaggctggctgc
cacgtggcccccgagagcgcttccagctctgcctccacatcctccctggccgggtccccc
gagcctgccccctcaagccctctctctccagggaacgaaccgcctgaccgaggcttcttc
atccgtatgaagtccaccctcaccaagagaggcctccacgtcaagtcctcgggctacaag
gtcagagtgatccatgtgaccgggcgaatccgctgtcgccctgccatggtgccaggctcc
gcccgctcggtgcgtcggccaatgggcttggtggcccttgcgcacacgctccctccctcc
acgctgaacgaggtgcgcatggaaagccaaatgtttgtcttccgggtcaacatggacctg
caggtcacctactgcgagaacaggatctcagagtacatggacctgagcccggcagaggtg
gtgggacacacctgctaccacttcatccacgtggaagacctggataacatcagacagagc
catgaggacttgttgaggaagggtcaggtggtgaccgggtactaccgttggctccagagg
agagggggttatctgtgggtccagtcttgtgccaccgtctccatcaaccacaaagccccc
cacgaacgcaacgtcatctgggtcaactacatcatcagtcgaacagagctcccagacact
cccctggatctgctgcagctcccagagagtctgagggcggagcgtctgaaagccagctcc
tccccttcggaactcacgccacaagcccggggtccacagccaatgaaaagctctgtgtgt
aaaggtgaccctgactctaaactgagagagatctataatcccggagtccaatcaggggac
aggaggaagcgtccgctgcggtctgactctgaaggcgctcccccagaaacgcggcgtcgc
ctggaagagttccgccagagagaggggagtgtgtccgccgcctcagacctgggcagtgag
agcgagggagaggagagagcgtgggagcaggggggagacagcgcgagggtcaaacgagag
gaggggccttcgaaacgaggtggggagaccccagtgaggggcggcggggtgcacaacggc
cgtgcggtaatccagcacctgaagagtgtagtgtcctcgcctctctctggtccccacaac
atcaagactgaacatgaggcactggctgcagggggtcgctggacacacacacacacctcc
tcacacacacaacccccaccctcacacacacacacaccttgcggcagcctgaacggcgac
agtcccccgacccctatcccggactcctcctccagcagtgaagccccacccaaaggtatt
ttcaccccgccctcccccgccatgtctcctcccatgtccggctcctcccctctaccctgt
gaggagcggggaatgttgtctggaggccgagtgggcgggcctgactttgagctgttgcag
agactggcagcggggggtgctgcaggacgggtgctgttccaccccctgaccctcggcccc
caggggccacagagcctgtacgcccccagtaccatccgctatgcgcccccagagctgccc
acctcccaccccggtgctgaggggctgcgcgtcgaccaccacaagggccccccagccttc
ttcccccacctccagaggctggccggcctgccctccttcagtgggttctccgcctcggac
aatcccttcaaccccttctgtatgaacggactgaggggggccgcagggtccgaggaggac
tga
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