Oncorhynchus nerka (sockeye salmon): 115137120
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Entry
115137120 CDS
T07952
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04270
Vascular smooth muscle contraction
one04625
C-type lectin receptor signaling pathway
one04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
115137120
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
115137120
09153 Circulatory system
04270 Vascular smooth muscle contraction
115137120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115137120
Membrane trafficking [BR:
one04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
115137120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
PH
Motif
Other DBs
NCBI-GeneID:
115137120
NCBI-ProteinID:
XP_029529062
LinkDB
All DBs
Position
LG11:complement(26413108..26485171)
Genome browser
AA seq
1464 aa
AA seq
DB search
MSDTQSSITDRFSNKANRSSSILSKDHPPDKKPKSDKPAVSSSHEFDPTDVLVQKSDCVL
VEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAERAGVQTGDRIIKVN
GTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLSECEAKLGFPGPQAGSSPVSSP
NTPGQPTGERPYSPHDRITSPLPIWEENNSVHSQKVDILQKMLSKEQQDLQAMKEEYSRN
PTPKLLKDIQEAKKHIPQLQWQLSKATGGAQDALQLGDGDDGSMVDMDHTPSSRGDSSND
LSWSSSTMSPVLRSFAAASPESLCQRDMLSYHSPKSTPRDSFNSCHSPDPEDTPDLDSLS
PSAVNSPSSRFVSQIIGAEDDYFDSDQEQVNGQCSCFQSMELLKSRPAHLAAFLHHVVSQ
FDPAPLLCYLFADLCKQTNSKETRRVFMDFHSFFIDRGANLKVAVPESISSDLDRRRTEL
IPEEQNRQLVQMMQDTLLPDIQRNLEDFRQKRSMGLTLAEGELARLDTERVRDRVALERE
RSCAENIITKIEDVLLTTQSTEEEKCTTMQYVILAYMKRLGVKVKEPRGLEFKRVRLNFL
PKIKKSVKTEKEGGEEKVKRTRFPSILGPPRRPSRVDPTSIGKAMDLNKPRPQKQLSQPC
LGAVEHLEAGRLTASQSSEGSELTHSSNTNATSPTNSHASDGGSRDSEFVLTPNSAFLKL
SEGLGDLDSLQYTPNTHFDYSLSPYSLDQLQEEDRESRILEGTPKSIRRLDGLGSTEVQS
EDDQGGTDSEHDPLNWQQLVGREVLAGLGAHEIKRQEVINELFYTERAHLRMLKVLDNIF
YQKLTREAILPPADIKNIFTNLGDIVQLHVLISEQMATIRKRNETSVIDQIGDDLLSWFS
GGEEEKIKQAVGTFCSNQPFALELIKSRQKKDSRFTSFMQEAESNRLCRRLQLKDIIPVE
MQRLTKYPLLLENIAKYTDDTMEKDKVKKAGDCCRKILNHVNQAVKESENKQRLEDYQRR
LDLSSLKQTENPMITELKNLDLTKKKMIHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQ
DERLVLKCHSKNLSGTADTKHIFSPIIKLNAVLVRSVATDNKSFFVLSMSDNGAQIYELM
AQTVSEQRMWQRQITQRADAMKVKPHSGIHLPQTDVEIIAADVARLGKDPDRISSGSSQS
IDKECSAASGGVMQTSLPDAKSFVGLKPEEEEPSREEGLYGDPDLADRLPFRMAVDGFSE
SDGLGFSPSRADDALKTLSALKQVLVTQLMSQEDSERAVRSSSGGGRLLRTTSLRTPVDS
RARVAVQKGSGMCTQASHPEDPAQDLVSGDTGFFESPEDYAGYLVLEGYGGSGESSTDDD
LQATGKQLSASRGCGAGDSGISLRFSSASQAGSISSFSRQVLSHLRNLQTNLNHLKEVEA
KYHSLLRQRPARSSTGTDINKDKR
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacacacagtccagtatcactgataggttttccaataaagcaaacagaagcagt
agcattctcagtaaagaccacccccctgacaagaaacccaaaagtgataaaccggcagtc
tcctcttcacatgagtttgaccctacagacgttctggtgcagaagagtgactgtgttcta
gtggaggggaagcccgagtcctgtgggcttgtccagcgatgtgtgatcattcagaaagat
gagaatggctttgggctgacggtgagcggagacaacccagtttttgtgcagctcgtcaag
gaagatggcgctgcagagcgtgcgggtgtacagacaggtgaccggatcatcaaggtgaac
gggaccctagtaacacattcaaaccacgtggaagtagtaaagctcatcaaatcgggctcc
tatgtggccctcacagtgttggggcgaccccctgggttgccccagatccccctatcggag
tgcgaggctaagctggggttcccggggccccaggctgggtcgtcccctgtctcctctcca
aacactcctggacagccaacgggggagcgcccatacagcccccatgaccgcatcacctct
cctctaccgatatgggaagagaacaacagcgtacacagccaaaaggtggacatcctgcag
aagatgttgtccaaagagcaacaagatttgcaggcaatgaaggaggagtacagcaggaat
ccgacgccaaaactactgaaggacatccaggaagccaagaagcacattccacagctgcag
tggcagctcagtaaggccactggaggagcacaggatgccctgcaattgggtgacggagat
gacggtagcatggtggacatggaccacaccccttcctccaggggagacagtagcaatgac
ctctcgtggagcagcagtaccatgtcccctgttctccgcagttttgcagctgcctccccg
gagagcctgtgccaaagagacatgttgtcctaccacagcccaaagagcacgccccgagac
agcttcaactcctgccactcccccgacccagaagacactccagacctggactcgctgtcc
ccctctgctgtaaacagcccttcctcacgcttcgtctcccagatcattggagctgaggat
gactactttgactctgatcaagaacaggtcaatggccagtgcagctgtttccagagcatg
gagctgctcaagtccagacctgctcacctggcagctttcctgcatcacgttgtctcgcag
tttgaccctgcaccgctgctctgctacctcttcgctgacctgtgcaagcaaactaactcc
aaagaaaccagacgggtgttcatggacttccacagcttcttcatagaccggggagctaat
ttaaaagtagctgttcccgagtccatctcctctgaccttgaccggcggaggacggagctg
atccctgaggagcagaacagacagttagtccagatgatgcaggacaccctgctccctgac
atccagaggaacctggaggacttcaggcagaagcgcagtatgggcctaaccctggctgag
ggggaactggcccggctggacacggagcgcgtcagagaccgggtagcactggagagagaa
cgctcctgtgctgaaaacatcatcaccaagatcgaggatgtcctgttgacaacacaatcc
acagaggaggagaaatgcactactatgcagtatgtcatcctcgcgtacatgaagcgcctt
ggagtgaaagtcaaagagccacggggcctagagttcaaaagggtccgcctgaacttcctc
cccaagatcaagaagagcgtcaagaccgagaaggagggaggggaggagaaggtgaaacga
accaggtttcccagtatcctcgggcctccgcgccggcccagccgcgtcgaccccacgtcc
atcggcaaggccatggacctcaacaagccgcggccccagaagcagctgtcccagccctgc
ctgggggccgtggagcacctggaggcgggtcgcctgacggccagtcaatccagcgagggc
tcagagctcacacattcctccaataccaacgccacctcgccaaccaacagccacgcctca
gatggaggcagcagagactctgagtttgttctgacccctaactctgccttcctcaaactg
agcgaaggtcttggagacctggacagtctacagtacactccaaacacacactttgactac
agcctgagcccatacagcctggaccagctgcaggaggaggacagggagagcagaatcctt
gaaggaacacccaagtctatcagaaggttggatggccttggttctacggaggtgcagagt
gaagacgaccaaggaggcacggactctgagcacgaccctctcaactggcagcagctggtg
ggacgtgaggtcctggctggactcggggcccacgagatcaagagacaggaagtcattaac
gagctgttctacactgagagggcccacctgcggatgctcaaagtgctagacaacatcttc
taccagaagctcaccagagaggccatactgcctcctgccgacatcaagaacatcttcacc
aacctgggggacattgttcaactgcatgttttgatatctgagcaaatggcaacaatccgg
aaaaggaacgagacgtctgtaatcgaccaaataggagacgacttgctgtcctggttcagc
gggggcgaggaggagaagatcaagcaggcggtgggcacgttctgcagcaaccagcccttt
gctctggagctcatcaagagcaggcagaagaaggactcgcgcttcacctccttcatgcag
gaggctgagagtaaccgactgtgtcgaagactccaactgaaggacatcattcccgtggag
atgcagaggctcaccaagtaccctctcctactggaaaacatcgccaagtacacagatgac
accatggagaaagacaaggtaaagaaggcaggcgactgctgcaggaagattctcaaccac
gtcaaccaagcggtgaaggagtctgaaaacaaacaaaggctggaggactaccagaggcgg
ctagacctctcgtctctgaagcagacggagaaccccatgattacagagctcaagaacctg
gacttgaccaagaagaagatgatccacgagggaccactgtcatggaaggtcaacaaggac
aagactattgagctgtacaccctgctcttggaggacatcctggtgttgctgcagaagcaa
gacgagcggctcgtcctcaagtgccacagcaaaaacctgtcgggcaccgccgacaccaag
cacatcttcagccccatcatcaagctcaacgcggtgctggtgcgctctgtggccacagac
aacaagtcgttctttgttctctcaatgtcggacaacggggcacagatctacgagctgatg
gcccagaccgtatcagagcagagaatgtggcagcggcagatcacccagagagcggacgcc
atgaaagtgaagccgcacagcggcatccacttacctcaaacagatgtggagatcatcgct
gcagacgtagcccgactcggtaaggacccggaccgcatctcctctggaagcagccagtct
atagataaagagtgcagcgctgcctctggtggcgtgatgcagacctctctcccagatgcc
aagtcctttgtaggactcaagcccgaagaggaggagcccagccgggaggaggggctttac
ggggacccggaccttgcagatcggctgcccttccgcatggccgtagacgggttcagcgaa
tcggacgggctgggcttcagtccttctagggctgacgatgccttaaagacattgtcggcg
ctgaagcaggtcctggtgacccagctcatgtcgcaggaggacagtgagcgtgctgtacgc
tcctcctcggggggtgggcgtcttctcaggaccacgtccctgaggacccccgtggacagc
cgtgcccgggtggctgtgcagaaaggctccgggatgtgcacccaggccagccaccctgag
gacccggctcaggacctggtgtctggggacaccggtttctttgagtcccccgaggattat
gcagggtacctggtcctggagggctacgggggctcgggggagagcagcacggacgatgac
ctccaggccaccgggaagcagctgagcgcctcgcggggctgcggggcaggagactctggg
atcagcctgaggttctcctctgcctcacaggcaggtagcatctccagcttcagccgacag
gtcctgtcccaccttcgcaacctgcagaccaacctcaaccacctcaaggaggtagaggcc
aagtatcacagtctactacgccagaggccggccaggtcatcgacaggcacggacatcaac
aaagataaaagatag
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