Oncorhynchus nerka (sockeye salmon): 115137190
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Entry
115137190 CDS
T07952
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115137190
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115137190
09142 Cell motility
04820 Cytoskeleton in muscle cells
115137190
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115137190
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115137190
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115137190
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115137190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115137190
NCBI-ProteinID:
XP_029529193
LinkDB
All DBs
Position
LG11:29960165..30109559
Genome browser
AA seq
1674 aa
AA seq
DB search
MTVSICCTTWTKLPLWWLVIMVVAGQAVMGGDQPEGLCGGRDCSTCQCFPAKGAQGVPGV
LGRQGPQGPPGFPGPQGPLGEKGYRGEEGFPGVSGPKGDVGIAGVPGYPGLDGVPGHPGP
GGVPGLPGLDGCNGTRGDSGFPGIHGLDGPDGRAGFSGIKGVPGDPTVQFIQYPGIPGDV
GRAGVTGLPGFQGISGPRGPTGPVGLDGSDGLTGSPGLRGPPGEKGRSLPGQKGDEGDQG
TQGPPGPFEFVDPPEDFYIKGSKGRSGVKGECGPRGSDGFDSLTGIKGEKGIIGFPGVRG
LPGYPGFPGQPGVKGILGSPGLPGLIGTEGPKGFQGDLGPKGLTEFRQVNYTACRGMPGE
SGLPGRPGPPGDVGEMGMHGRQGLPGVSIPGTNGEPGPIGMTGTKGVKGEPGMHYQNGPT
PGEPGKPGTAGLSGLKGERGPPGCGGTYCTPGSPGEPGAAGDQGPPGSAGFPGSKGIDGD
CDCELLQPSKGDPGFMGIPGLPGLRGLCGAPGPRGDIGFPGDIGRSGADGFPGFAGVRGP
KGQKGDVYLCIKGVKGDIGLPGLAGRPGFTGRRGDEGNPGVPGDAGPEGDSYSGFPGERG
YPGNDGPKGLAGPVGPPGPDVIGAVGERGLPGDQGPPGFRGSPGLKGVRGDTLPCIPSNP
GAPGQKGDSGSPGLNGESGPPGYLGALGPDGVKGEKGDFGLSGPPGPIGSSGCVGDSGEA
GAEGLSYDGAAGSPGFRGSPGLKGPFGDSVPGAPGPIGLKGVLGLSGPKGVPGPPGPIGL
TGAAGLPGTPGRKGEQGESGATGRYGAPGPTPEQCEEGAPGLQGIMGLIGDIGPPGYAGE
KGDNGEEGLSGTGPKGAAGKPGSPGFPGYLGAQGPVGPLGDPGIPGAQGQKGIIGVPGRD
GSVGGPGRSGALGSPGRKGERGFDGQRGLPGDEGLKGEKGRTGAPGDTGDTNFIPIKGLP
GAPEPPGLDGFTGPRGDKGPAGGRGLPGYPGLLGVPGIEAGPQGPPGTCGRSGEPGLPGL
PGQRGIIGFPGEIGDQGESGCTGSPGTPGFPGYSGLKGERGDSIGIPGPGGDRGATGDTG
AFAAPGDQGDVGEPGVSGAPGPKGLTGPQGSIGPPGPAGVIGPPGLSGKPGADGLPGTSG
QTGPKGDQGPLGLKGPPGPLGLHGLDGLKGVKGEVGARGPGVPGPSGAPGYKGEKGSRGC
QGPQGPSQPGPLGPKGQSGLTGSPGDTGASGLPGMDCKESMPGHCGESGFPGRDGPPGSP
GDIGCSGPALPMTSEEGDNGVPGLPGLKGDRGTSGPPGLPGIAGLPGPKGERGASGMMGV
PGHPGSTGTCGPPGPKGTEGLQGDEGPKGEKGNVITPLIIPPPPGPVGAPGQPGLPGFTG
GPGSNGFEGQKGRSGQLGSPGFPGPVGPPGADGAPGDSGVQGERGALGPQGAPGPLGDAG
SPGPTTTFNSGFLLVMHSQSDMLPSCPADMTQLWTGYSLLYLEGQEKAHTQDLGQAGSCM
RLFSTMPFSFCNMGTCDYASRNDKSYWLSTTASVPMMPVADQDIQQHISRCVVCEAPSPA
VAVHSQDNSNPFCPPNWRSLWVGYSFLMHTGAGDEGGGQSLTSSGSCLRDFRAQPFVECQ
GPRGTCHYFANIYSFWLTRVGADGPLSSSTSQGTLKEEWQQRLNVGRCNVCMKE
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgacggtctctatctgctgcaccacctggaccaaactccctctctggtggcttgtgata
atggtcgttgctggacaggccgtaatggggggggaccaaccggagggactctgtgggggg
cgggactgctccacctgccagtgtttccctgctaaaggagcccagggtgttccaggagtt
ttaggacgacaggggcctcaggggccacctgggttcccgggcccccaggggcctcttgga
gagaagggatatcgaggagaggagggcttccctggcgtatctggaccgaagggagacgtg
ggtattgctggcgtaccaggatatcctggactagatggtgtcccgggtcacccagggcca
gggggtgttcctggtctaccagggcttgatggctgtaacgggaccagaggggactctggt
ttccctggaatccatggtctggatgggcctgatgggagagcgggtttctcagggatcaaa
ggagtgccaggggaccctaccgttcagttcatccagtaccctggtatacctggtgatgtc
ggccgtgctggggttactggactgcctggcttccaaggcattagcggccctaggggacct
actggaccagttggtttggatggatcagatggtttaactggttcacctggcctgagaggt
ccgcctggagagaaaggaagatcattgccaggacagaaaggagatgaaggagaccagggt
acccaagggcccccaggaccctttgagtttgtggaccccccagaagacttctacatcaaa
ggaagcaaggggaggagtggtgtgaagggagagtgtggacccaggggaagtgatggcttc
gactcgttgacagggataaaaggagaaaagggaatcatcggatttcctggagtcaggggt
cttcctggatatcctggcttccctgggcaacctggtgtaaaggggatcctcgggagccct
ggcctacctggtctgataggaacggagggacccaaggggttccaaggagatcttggtccc
aaaggactgacagagttcaggcaggttaattatacagcttgtagagggatgccaggggag
tcggggctgcctggaagaccaggaccacctggagatgttggggagatggggatgcacggc
cgccaaggactgcctggggtatcaatacctggtaccaatggtgagcctggcccaataggg
atgactggcaccaagggggttaaaggagagccagggatgcactaccagaacgggcctaca
cccggagagcctggtaaaccgggcacagcaggcctcagtggtctgaaaggagagcgcggc
cccccaggttgtggaggtacgtactgcacccctggttcaccaggagagcctggagcagct
ggagatcaaggtcctcctggatctgcagggttccctggtagcaaaggaattgatggtgat
tgtgattgtgagctcctccagccttcaaagggagaccctggctttatggggattccggga
ttgccagggttacgaggactttgtggggcaccaggcccgaggggtgacattggttttccc
ggagacataggaagaagtggggcagacggcttcccaggatttgcaggtgtccggggtcca
aaaggtcagaaaggtgacgtctatctatgcattaaaggtgtgaagggagacattggcctc
ccagggctggctggtcgtccaggcttcactgggaggagaggagacgaagggaatccgggt
gtgcctggtgacgctggcccagagggtgacagttactcaggtttcccgggtgagagaggg
tatccaggtaatgacgggccaaaagggcttgctggacccgtcggccccccaggacctgat
gtgattggggccgtgggggaacggggactcccaggcgaccagggacctccaggattcagg
ggatctcctgggctcaaaggagtcaggggtgacaccctaccctgcatacccagtaaccct
ggtgccccaggacagaaaggcgattccggaagcccagggctgaacggagagtcaggaccc
ccagggtatcttggagctttgggcccagacggggtgaagggagagaaaggagactttggg
ctgtctggcccacctggacccataggctcgtcggggtgtgttggagactctggagaggct
ggtgctgagggtctgagctacgacggagctgccggctctcctggcttccgagggtctcca
ggactgaagggcccatttggggactctgtccctggtgctccaggacctataggcctcaag
ggcgtactgggtctgtcggggcccaaaggagtgccaggtccacccggtccaatcggatta
acaggtgctgcggggcttcctggtacaccgggaaggaagggggagcagggagagagtggt
gccacaggcagatatggggccccagggcccacccctgaacagtgtgaagagggggcccca
ggccttcaaggaatcatgggactaataggggacataggccctccaggttacgcaggcgag
aagggtgataacggagaggagggtctgtccggcacgggtcctaaaggagctgcagggaaa
ccgggctctccagggtttcctgggtaccttggagcccagggccccgtggggccattagga
gaccctggcatacccggggctcaagggcagaaaggtataataggggtacctggtagggat
gggtcagtgggtggtccagggaggagtggagcactaggatccccgggaaggaaaggagag
aggggctttgacggtcaacgaggcttaccaggagatgagggcctcaaaggagaaaagggt
agaacaggtgcccccggagacacaggagacaccaacttcattccgatcaaaggactacca
ggagctcccgaacccccaggtctggatggcttcactggtccaagaggtgacaagggtcct
gcgggaggcaggggtctaccagggtacccagggctattgggggttcctggcatagaggct
gggcctcaaggaccacctggtacatgtggacgctcaggtgaacctggactacctggcctg
cctggccaaaggggtatcataggcttccctggagagattggtgatcagggtgaatctggg
tgtactggatctcctggcacacctggcttcccagggtacagtggtcttaaaggtgaacgg
ggcgactccattggcatccctggaccgggtggtgatagaggagctacaggagacactgga
gcatttgccgcaccgggtgaccaaggtgatgtaggtgaaccaggagtttcaggagctcca
ggacctaaagggttaactggtcctcaaggatccatcggacctccagggcctgctggtgtg
atcggacccccaggcctgagtggtaaacctggggctgatggtctcccagggacctctgga
caaactgggcccaagggagaccaaggaccacttggactcaaaggtccacctggaccactg
ggtttgcatggactggacggactaaagggtgtgaagggagaggttggggccagaggccca
ggtgtgcccggtccctccggtgctccaggctataaaggagagaagggttccagagggtgt
caagggcctcaggggccctctcagccaggacctctgggccccaagggccagtctggacta
acgggaagcccaggagacacaggtgcctccggtctaccaggcatggactgtaaggagtcc
atgcccggccactgtggggagtcaggcttccctggacgcgacggaccaccaggttcacca
ggtgacattggctgctccggccctgctctgcccatgaccagtgaagagggggacaacggt
gtgcccggcttaccagggctcaaaggggacagggggacttcaggcccccccgggctgcct
ggcattgcagggttacctgggcctaaaggtgagagaggagcttcggggatgatgggggtc
ccaggacaccccggttccacaggaacatgtgggcccccaggacccaaaggaaccgaggga
ctgcaaggagatgaaggtccaaaaggagaaaaggggaatgtgatcactccattgataatc
ccacctcctcctggacccgtaggcgcacccggtcaacccggccttcctggcttcactggc
ggcccgggatccaacggttttgagggacagaaagggagaagtggccagttgggttcacca
ggattcccggggcccgtgggccccccaggagcagacggggccccaggggacagtggggta
cagggggagaggggggcattgggaccacagggcgccccaggtcctttgggagatgccggc
agcccaggccccaccaccacctttaactctggcttcctgttggtgatgcacagccaatca
gacatgctcccttcctgtccagcagacatgacacaactgtggactggctacagtttgctg
tacctggagggccaagagaaagcccacacacaggacctcggtcaggctgggtcatgtatg
cgtctcttcagcaccatgccgttctccttttgcaacatgggcacgtgtgactacgccagc
cgcaatgacaagtcctactggttgtccaccacagcgtcagtgcccatgatgcccgtggca
gaccaggacatccaacaacacatcagccgctgcgtggtgtgtgaggccccctcccctgct
gtggcagttcacagccaggacaacagcaatcccttctgtccccccaactggaggagtctt
tgggtgggatactccttcctcatgcacacaggggccggcgatgagggtggtggccagtct
ctgacatcatcaggaagctgcctgagggacttccgtgcccagccgttcgtggaatgccag
ggcccgcggggtacgtgccactacttcgccaacatctacagcttctggttgacccgggtg
ggcgcagatggaccgctgagctcctctacttcacagggcacgctcaaagaggagtggcaa
cagcgcctcaacgtgggccggtgcaacgtgtgtatgaaggagtga
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