Oncorhynchus nerka (sockeye salmon): 115137209
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Entry
115137209 CDS
T07952
Name
(RefSeq) TBC1 domain family member 2A-like
KO
K20165
TBC1 domain family member 2A
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115137209
Membrane trafficking [BR:
one04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
115137209
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
PH
PH_11
TSC22
DivIC
PH_alsin
PH_3
YabA
Seadorna_VP6
DUF1664
Motif
Other DBs
NCBI-GeneID:
115137209
NCBI-ProteinID:
XP_029529234
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Position
LG11:complement(31105458..31155444)
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AA seq
874 aa
AA seq
DB search
MNDIAFLNKDGDSFPTESRKQSPVVSAAATLCGYLDKLSGPLKVWRSLWFIYEEKECQLV
YYKCAQDVNPLGWIDLSNAILGDLPQADQGTFYIQTPERTFTLKAVNCESMIYWLKQLQL
KRWHHGNISGKLGMVTSHHALRRYATLSDVLLRHTPTGIHKEYLLRSRSSQELSHSLSWE
ELWDPFLPLKDIQAPPYFDQDKSPPKTNIEPSGPKTQWVQEIEAPKGHQSSLSSEGSSSN
PADKTASPQQEEPPDTARLQQEVLSLAGQVKAQKDLVSLLQKALELAQQEKLTPAVESPR
SECEWKSSNPQPWNQGECNTDHSYGLQVAPLLRHDCVAESQDHLRLLAERNQAERELVLR
LSQQVAESLADPQRSLVRGWTVLETQEQLRQEIRNLKDNIEAYKTQNTYLNAEIYKLTKE
WRKSTEQEKCLMIKCAHLEAKVFRMESRSLTVLFKLQESRGLERHREAIKTLITDTLREG
GRDILELNPAREYDEYGFRISTDIQMDDMKLLAKLQALGIHSHDHPQQQKDGEEEGDSER
LWGRWAQHFDGRRSDKAVASPKLKGLLRKGVPHHYRRRVWRWIVWSRTRSLRERQPHWYQ
QICFRSQAASAHRVSQQIWLDLETTLRGNRHFSFPAKCAVRKLHRILLAFSCHNRSVGYC
QGLNRLAAMALLVLQSEEDAFWCLVAIVETIMPQDFYGKTLTASQVEQRVLKDFMAEKMP
RLTAHFHCHGVDVSLVTSDWFLAAFVERLTSDVLLRIWDAFLYEGTKVIFRYALALFKYT
EEDILKIHHSVDIYQYLRFITRTITDSRRLTTIAFSDMNPFPFRLLRQRRALHLQCVHVQ
LSELERIQRELGRERRQHKDRELGLVSSEDEGDT
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacattgcctttctaaacaaagacggggacagttttcctactgagtccagaaag
cagagcccagtggtatctgctgccgccacgttatgcgggtatctggacaagctgagcggg
ccactgaaggtctggaggtccctctggttcatatacgaagagaaggagtgtcagctggtc
tactacaagtgtgcccaggatgtgaatccactgggatggattgacctgtccaatgccata
ctgggagacctaccacaggcagaccaggggaccttctacattcaaacacccgagcgcacc
ttcaccctcaaggctgtgaattgcgagtctatgatatactggctgaagcagctccagttg
aagaggtggcatcatgggaacatttctggaaagctgggaatggtcaccagtcaccatgca
ctacgacgatacgccacgctgagtgacgtcctcctcagacacactccgacaggaattcat
aaggaatacttactccggagccgctcctcccaggagctcagccacagcctcagctgggag
gaactctgggatccattcctgccactcaaagacatccaggcccctccatattttgaccag
gacaaatcacctccaaaaacaaatattgagccctctgggccaaaaacacagtgggtccag
gagatagaggcaccaaagggacaccagagctccctaagcagtgagggctcctcttctaac
cccgcagacaagactgctagtccacagcaggaagagcctccagacaccgcccgtcttcaa
caggaagtgctcagtctggcaggccaggtcaaggcccagaaggatctagtatccctgttg
cagaaggccctggagttggcccagcaggagaaattgactcctgcagtagagtccccgagg
tcggagtgtgaatggaagagttccaacccacaaccatggaatcaaggcgagtgcaacaca
gatcattcgtatggcctgcaggttgcgccactgctgcggcacgactgtgtggccgagtct
caggatcacctcaggttactggctgagaggaaccaggctgagagagagttggtcctccgt
ctgtcccaacaagtggctgagagtttggccgacccccagcgaagcctcgtccgcggttgg
actgtccttgaaacgcaggagcagctgagacaggagattaggaatcttaaggacaacatt
gaggcctacaagactcagaatacttacttgaacgcagagatctacaagttaaccaaggaa
tggaggaagagtacagaacaagagaagtgcttgatgataaagtgtgcccatctggaggcc
aaggtgttccggatggagagcaggtctctgacagtcctcttcaagctacaggagagcaga
ggtttggagagacacagggaagccataaagaccctgatcaccgacactcttcgggagggc
gggagggacattctggaactgaaccctgccagggaatatgatgagtatgggtttagaatc
tccactgacatccaaatggatgatatgaagctgctggccaaactgcaagcattagggatt
cattcccacgatcacccacaacaacagaaggatggggaagaggagggggacagcgagcgt
ctttggggccgatgggcacagcactttgatggcagacgatcagacaaggcggtggcctct
ccgaagctgaaggggcttctgagaaagggcgtgccgcaccactacaggcgtcgtgtgtgg
cgctggatagtgtggagccgcacccgctccctgagagagcgccagccccactggtaccaa
cagatatgctttaggagccaggctgcttcggcccaccgggtctcgcagcagatctggttg
gacctggagaccactctgagggggaaccgccacttctccttccccgccaagtgtgccgtc
cggaagctacatcgtatcctcctagccttttcttgtcataaccggtctgtcggctactgc
cagggcctcaacagattggctgcaatggccttgctagtgttgcagagcgaggaagatgct
ttctggtgtctggtggccattgtcgagaccatcatgcctcaggacttctatggcaagact
ctaacagcatctcaggtggagcagcgcgtgctcaaggacttcatggcagagaagatgccg
agactaacagcccatttccactgtcacggagtggatgtgtccctggtcacctccgactgg
ttcctagctgcgtttgtggagaggctgaccagtgacgtcctgctcagaatttgggacgcc
ttcctgtacgagggcaccaaggtgatatttcgctatgcattggcgctcttcaaatacaca
gaagaggacattctgaagattcatcatagtgtggatatctaccagtacctccgtttcatc
accagaaccatcacagacagcaggagactgacaaccattgcattcagcgacatgaacccg
tttcctttcaggctgctccgtcagagacgggccctgcaccttcagtgtgtgcatgtacag
ttgagtgagttagagcgtatccagagggagctgggtagagagcgacgccagcacaaggac
agggagcttgggctcgtttccagcgaagatgagggggacacatga
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