Oncorhynchus nerka (sockeye salmon): 115137219
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Entry
115137219 CDS
T07952
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115137219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115137219
03009 Ribosome biogenesis [BR:
one03009
]
115137219
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115137219
Spliceosome [BR:
one03041
]
Complex A
U2 snRNP components
U2 related factors
115137219
Complex B
115137219
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
115137219
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
90S particles
Helicases
115137219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
Flavi_DEAD
AAA_29
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
115137219
NCBI-ProteinID:
XP_029529252
EnsemblRapid:
ENSONEG00000030864
LinkDB
All DBs
Position
LG11:31508139..31521084
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AA seq
763 aa
AA seq
DB search
MSKRHRLDLGDDYSNKKRSDGKDRDRDRDRDERSKDRERDRDRDRDRDRDRDRDVKPSVV
PPNTMMAVGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILAR
HQSFVLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVM
LGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDIL
MGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYL
EAAIRTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTL
PPQQQQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIR
VESLLVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVL
QLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLA
KMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYH
AFKQNHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRA
LVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSD
IKPEWLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccgtttagatttaggcgacgactactccaataaaaagagatctgat
gggaaagacagagatcgcgacagggaccgcgacgagcgctctaaagacagggagagggac
agggaccgcgacagagatcgggacagggaccgagatagggatgtgaagccctctgtcgtg
ccccccaacaccatgatggccgttggaggcatgcttcctctcaagcagacagccatgcag
cagcagatcaacccgttcacaaacctgccccacacaccacgctactatgagatcttgaag
aagaggctgcagctgcctgtgtgggagtacaaggagcgcttcaacgacatcctggcacgc
caccagagctttgtgcttgtcggagagacgggctccgggaaaaccacacagatcccccaa
tggtgtgtggacatggtgaagggcttgggtggccccaagaaggcggtggcctgtacccaa
cccagaagggtggcagccatgagcgtggcccaaagggtggccgacgagatggatgtcatg
ctgggccaggaggtgggctactccatacgatttgaggactgcagctccgccaagaccata
ctgaagtatatgacagacggtatgttgcttcgggaagccatgaacgaccccttgctggag
cggtatggcgtgatcatcctggatgaggcccacgagagaacgctggccacggacatcctg
atgggagtattgaaggaggtggtccgacagaggtcagatctcaaggtgattgtgatgagt
gccacattagacgcagggaagttccaagtgtactttgacagctgtccgctgctgaccatt
cccggacgcacacaccccgtggagatcttctacacccctgagccggagcgggactacctg
gaagccgccatccgcacggtcgttcagatccacatgtgtgaggaagaggagggggactgt
ctgctgttcctcaccggacaagaggaaattgacgaggcctgtaaacggatcaaacgggag
atcgacgacttgggacctgaagtcggagacatcaaagtcattccactatattccacactg
cctccccagcagcaacaaagaatctttgaggccgcaccccccaggaagcccagcggtgcg
ataggaagaaaggttgtggtttcgacaaacattgctgagacatcccttaccatcgacgga
gtggtgtttgtgatcgatcccggttttgccaagcaaaaggtgtacaatcctcgtatcagg
gtggagtctctcctggtaacggcgatcagcaaagcctcggcgcagcagagggcaggccgt
gccggcaggacacggccagggaaaactttccgcctctacactgagaaagcctacaagacc
gagatgcaggacaacacgtatcctgagattctccggtccaacttgggttctgtcgtgttg
cagttgaagaagctgggtatcgatgacctggtgcactttgacttcatggacccaccagcc
ccggagaccctgatgcgggcgctggagctgctcaactacctggcggcgctcaacgacgac
ggcgatctgacagagctgggctccatgatggcagagttcccgttggacccacagctggcc
aagatggtgatcgccagctgcgagttcaactgctccaacgagatcctctccatcaccgcc
atgctgtcagtcccgcagtgtttcgtccgccccaccgaggctaagaaggcggcggacgag
tccaagatgcggttcgcccacatcgacggagaccacctgacgctcctcaacgtctaccac
gccttcaaacaaaaccacgagtctacacagtggtgctacgacaactttgtgaactaccgt
tcgctgatgtcggccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaac
ctgccccggcgcagcaccgaattcaccagcagagactactacatcaatatccgccgagcg
ctagtcacaggctttttcatgcaggtggctcatttggagcgcactggccattatctcaca
gtcaaggacaaccaggtggtccagctacacccctctaccgtcctggaccacaagccagag
tgggtgctctacaatgagtttgtcctcacaaccaagaactacattcgcacctgctcggat
atcaaaccggaatggctggtgaaggttgctcctcagtactacgaaatgggcaacttccca
cagtgtgaagccaagaggcagttggagcgaatcgttgccaaactccagaccaaggagtat
tcccagtactga
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integrated database retrieval system