Oncorhynchus nerka (sockeye salmon): 115137271
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Entry
115137271 CDS
T07952
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115137271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115137271
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115137271
mRNA degradation factors
5'-3' decay
Decapping complex
115137271
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
HTH_AraC
Motif
Other DBs
NCBI-GeneID:
115137271
NCBI-ProteinID:
XP_029529342
LinkDB
All DBs
Position
LG11:complement(34938873..34960875)
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AA seq
814 aa
AA seq
DB search
MFRFQSLDEDCTLEKEEGLVEEEDEIDQFNDDTFGDGAIDDDWQEEHKRLAELEERKNDG
LGGLGLGGLGMGGMGGGDSTVQLPPPASRVPHPSSLPPPHHSLSSMPPPGLEERGGGDLA
ESLAMLILGADPAIASVGGPAGPGDRSTGLPPSPSMPQQHHHPSQLPSHHQLTPLGLPPG
PLHPSLLSYQQHQHLLRRGGAPMQQMNSHNIWENNMGFGPVSVTPGLITQMEDSPLMSII
KEVGLPNRPPPVMSEDGRDFSERAPPPRSSSPVIGSPPVRAVPIGTPPKQPMSHAMNHQQ
QIHHPTTVHVRAPIHHQHRYPPSFPERISPNTLLNMANSPLCRPPFPAGVGPVLSQIQRA
QMLNSQVAGFPRGCQGPPLLPGGGGFRPFFGQPPPHRMGPHHNHVPCPIIRHNTTHLHPQ
HRRMLTQRMQSRGGERGGRVGDWRSRDPYSNLMTQREKEWVAKIQMMQLQSTDPYLDDYY
YQNYFEKMEKRQERDRDGVRKEHTTKLITPQVAKLEHTYRPVQFAGSLGKLTVSSVNNPR
KMIDTVVTSRTDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDFEKRFMQTPEEQRETL
LEQHKTHTLQLYASLKEKEWDDRIANKEARQRVSDEQCLLIMSVRKGKRLISRLIPFLPP
LQAATVVMGIARNLHALAKKDKQDQALCWLVEPVAVVISSLSSAALTDLLQELQGSEGQL
SKVLQNKFGVTLLYLILSEGERMQSSDLNCQLMDDNRWTELVFSVTRELLKVPPSSLSPP
LFTPPNLLSLFSRYVDRQRLELLQEKLQISALSR
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcccttgatgaagattgtaccctggagaaggaggaggggctggta
gaagaagaagatgagattgaccagtttaacgacgacaccttcggagatggagccatcgat
gatgactggcaggaggagcacaagcggctcgcagagctcgaagaacgaaagaacgacgga
ctcggaggtttaggtctagggggactagggatggggggaatgggaggtggagactccacc
gttcaactccctcctcctgccagtcgcgtcccccacccgtcatccctccccccaccacat
cactccctctcttcgatgccccctccgggcctggaggagaggggggggggcgacctagcc
gagtccctagccatgttgattctcggggcggacccggccatcgccagcgtgggtggtcca
gccgggcctggtgacaggtccactggtctccctccttccccttccatgccccagcagcac
caccacccctcccagctcccttcccaccaccagctgaccccgttggggctgcccccgggc
ccactgcatccttccctgctgagctaccagcagcatcagcacctcctacgccgagggggt
gcccccatgcaacagatgaactcacacaatatctgggagaacaacatgggatttgggcct
gttagcgtcacccctggactaatcactcaaatggaggacagtccacttatgtccattatc
aaagaggtggggctgcccaatcggcctccgccagttatgagcgaggatggtcgggacttt
tcggaaagggcccccccgcctcgctcgtcctctcccgtgattggaagcccaccagtgagg
gctgtgcctatcgggactccgcccaagcagccgatgagtcatgctatgaatcatcagcag
cagatccaccaccccaccaccgttcatgtgcgagccccgatccaccaccaacaccgctac
cccccttccttccctgagcgcatctcccccaataccctcttaaacatggctaactctcct
ctttgtcgtcctccattcccggccggcgtgggtcccgttctgtcccagatccaacgtgcc
cagatgctcaactctcaggttgctggcttccccaggggctgtcagggtcccccgttgctg
cctggcggcggaggcttcaggcccttcttcggccagccccctccccacaggatgggtccc
caccacaaccacgtaccctgtcccatcatccggcacaacaccacgcacctgcacccccag
caccgccgcatgctcacccagaggatgcagagtagaggaggtgagcgtggcgggcgtgtg
ggggactggcggagcagagacccctacagtaacttgatgacccagagggagaaggagtgg
gtggccaagatccagatgatgcagctgcagagcactgatccctacctggatgactactac
taccagaattactttgagaagatggagaagaggcaggagagagaccgagacggcgtgagg
aaggagcacaccaccaaactcatcaccccccaggtggccaagctggaacacacctacaga
ccagtgcagtttgcaggctcactgggtaagctgactgtgtccagcgtcaacaaccccagg
aagatgatcgacacagtggtgaccagtcgcactgatgacgaggagaagagagagaaacag
gtgtggaataagaggcggcagatcctctacactgtggagaagatgtacagtctgctgctg
gaggtgcaggactttgagaagcgcttcatgcagacgccagaggagcagagagagaccctg
ctggagcagcacaaaacccacacgctgcagctctacgcctccctcaaggagaaggagtgg
gacgacaggattgccaacaaagaagctcgtcaaagagtgagtgacgagcagtgtctgttg
atcatgtcggtgcgtaagggaaagcgcctcatctccaggctcatcccattcctgcctccg
ctgcaggctgccaccgttgtcatggggattgcccggaacctgcacgccctggccaagaaa
gacaaacaggaccaggcgctgtgctggttggtggagcccgttgctgtggtgatctcttcc
ctatctagcgctgccctcacagacttgctgcaggagctgcaaggcagcgagggtcaactg
tccaaagtgttgcaaaataagtttggtgtgacgctgctttacctgatcctgagtgaagga
gagcgaatgcaaagctctgaccttaactgtcaactcatggatgacaatcgatggacggag
ttggtgttctctgtgaccagggagctgctcaaagtgcccccctcgtccctgtcccctcct
ctcttcacccctcccaacctgctctctctcttctcgcgctacgtagaccgacagaggctg
gagctgctgcaggagaagttacagatctccgcattgtccaggtag
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