Oncorhynchus nerka (sockeye salmon): 115137374
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Entry
115137374 CDS
T07952
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one02010
ABC transporters
one04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115137374
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115137374
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115137374
Transporters [BR:
one02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
115137374
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
115137374
NCBI-ProteinID:
XP_029529531
LinkDB
All DBs
Position
LG11:complement(39282226..39323393)
Genome browser
AA seq
2280 aa
AA seq
DB search
MAVSTQLGLLLWKNFTYRRRQTLQLIIEIIWPLFIFFILISVRMHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRHPTPGETPGLVGNFNDSIISRLFIDAKKILLYSQNDK
SFEGYKVLVRALRKLQGNTAGFKLKDFLRDKETLSSFLHRNASLSHHAVQQIVEADLNLE
KVLIGGFGVHLRDMCNTTSLEEFVTISDKNVSRLTQDIICKASPDWLNKAQDHFLSNLDF
LKPIRKDVKSDPEVVQKVSAATDGLLESLGALAVELASMKSWKEMRNEIHYLTVNATGSP
SHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGGNGSDDQPVSAYDNTSTPY
CNSMMRSLEASPVSRMIWRALKPLLMGKILYTPDTPATQRIIHEMNKTFQELGILRDLGG
MWEEMRPKVWTFMESSDEMHLVRTLLQNNASARFFNDRLAGTEWKAEDVARFLTKTAEDK
RPAGSAYTWREVFNETDDAIRTISRFMECVNLDKLEPVANEERLVNKSMGLLDNQKFWAG
IVFPDIARSNSSDLPGNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDVIEQGIVRAVTGSKEKTGVYIQQMPYPCYVDDMFLRVMSRSMPLFMTLAWMYSVAL
IIKGVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISASLLVVILKMGNLLPYSD
PCVVFLFLASFAVVTIMQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKVIVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPLEEDSYSLTTSICLMLFDSFL
YGVMTWYIEAVFPGQYGIPRPWYFPFTKSYWCGEKQGKNIQERKEGNAEAVCIEEEPSHI
EPGVYIKNLVKVYSHGNKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRSELSAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKAEMEQI
VNDIGLPHKRQCRSNTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRAGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFD
LTLNSCRNSSSSSSVSYSKKVGLPQPQPQALTVLKGDSVSESSSDAGLGSEPESEATTID
VTMISNVIFKHVPAARLVEDLGHELTYVLPYEAAKGGAFVELFHEIDDRLSDLGISSYGI
SDTTLEEIFLKVAEDSGVDAAELPNSDGTIPARRHRRHAFGDHQSCLKPFTEDDAFDFND
SEESRETDWLGGSDGKGSYQVKGWRLIRQQFVALIWKRFLYARRSRKGFFAQIVLPAVFV
CIALVFSLIVPPFGKYPSLELEPGMYEEQFTFISNDAPEDADTNKLLGALTNYDGFGSLC
NSPHAPCNTLDEEWAIPEVPESVRDIFMNGNWSMENPSPLCECSCEGRKKMLPECPAGAG
GLPPPQVKISDQGTLQNLTGRNISDYLVKTYAQIIGKSLKNKISVNEFRYGGFSLGARNT
QLLPPGDDIDQAISEIRRRFHLERGTAADRFLASLSSFIQGLDTKNNVKIWFNNKGWHSI
GSFLNVMNNGILRASLPAGQDSSKYGIRAFNHPLNLTKEQLSQVALMTTSVDVLVSICVI
FAMSFVPASFVVFLIQERVNKAKHMQFISGVQPFLYWLSNFIWDMCNYIVPATLVIIIFI
CFQQDAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGS
VSTFVLELFGSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRS
PLAWDMVGKNLFAMAVQGVVFFTITVLIQYRFCIKARSLRTDQKPIGEEDEDVARERQRI
MGGGGQSDILELKQLTKVYNRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGD
SIVTSGEAYLAGKSVLTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVC
EVAEWGIRKLGLIKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRA
LWNCILSIVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTII
LRVAGPDPDLRPVMEFIEKELPGSTLKEKHRNMLQYQLSSSKTSLARIFSILAKNKEWLH
IEDYSVSQTTLDQVFVNFAKDQSDEDHLKDISVHKREAVAVDITQLKSFLTDEKARESCV
NT seq
6843 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctctactcaactgggcttactgctgtggaagaacttcacctacagacggaga
cagacactccagctaattatcgagataatatggccgctcttcatcttcttcatcctcata
tctgtgaggatgcattacccgccctacgagcaacatgagtgccatttccctaacaaggcc
atgccctcggcgggcaccttgccctgggtacaagggatcatctgcaacgccaacaacccc
tgcttccgccaccccacaccaggagagaccccagggctggtgggcaacttcaacgattct
ataatctcccgtctgttcattgatgccaagaagatcctcctctacagccagaatgacaag
agcttcgagggctacaaagttctggtgcgggctctgaggaaactacagggcaacacggca
ggtttcaagctgaaggactttctccgcgataaggagaccttgtcgtcgttcctgcatcgc
aacgcctccctatcccatcacgccgtccagcagattgtggaggctgacctcaacctagag
aaggtcctgattggaggtttcggcgtccatcttagagatatgtgtaacaccacttctctg
gaggagtttgtgaccatctccgacaagaatgtgtcacggctcactcaagacatcatctgc
aaggcctcccctgattggctgaacaaggcccaggaccacttcctgtccaacctggacttc
ctaaaacccatacggaaggacgtgaagtccgaccctgaggtcgtccagaaggtatccgcg
gcaaccgacggtctgctagagagcttgggagcgctggctgtagagctggccagtatgaag
agttggaaggagatgcgtaacgagatccattacctgacggtcaacgccacgggctccccc
agccacatgtaccaggccgtgtcccgtatcgtctgtggccaccccgagggcggcggactg
aagatcaagtcgctcaactggtacgaggacaacaactacaaggccctgttcggtaaccac
ggcggcaacggcagcgacgaccaacccgtgtccgcctacgataacacctcaactccgtac
tgtaacagcatgatgaggagtctggaagccagccccgtctccaggatgatctggagggcc
ctgaagcctctcctcatgggaaagatcctctacacccccgacactcctgccacacagagg
atcatacacgagatgaacaagacgttccaggagctgggtatcctgagggacctgggtggg
atgtgggaggagatgaggcctaaagtctggaccttcatggagagcagtgatgagatgcac
ctggttcggacgctgcttcagaacaacgccagcgcccgcttcttcaacgaccgcctggct
ggcacagagtggaaggcggaggacgtggcccgcttcctgaccaagactgccgaggacaaa
cgccccgccggctcggcctacacctggagagaggtgttcaacgagaccgacgacgctatc
aggaccatctcccgctttatggagtgtgtgaacctggataaactagagccagtggccaat
gaggaaagactggtcaacaaatccatgggtctcctagacaaccagaagttctgggctggg
atagtgttcccggacatcgcccgtagcaacagttctgacctgccgggtaacgtcaactac
aagatccgcatggacatcgacaatgtggagcgcaccaacaagatcaaggacggttactgg
gaccctggtccccgggccgacccctttgaggacctgcgctacatctggggcggtttctcc
tacctgcaggacgttatagaacagggcatcgtcagggcggtgacgggcagtaaggagaag
acgggagtctacatccaacagatgccttacccctgttacgtggacgatatgttcctgcgg
gtgatgagtcgctccatgcctctcttcatgaccctggcctggatgtactctgtggccctc
atcatcaagggcgtggtctatgagaaggaggcgcggctcaaagagaccatgaggatcatg
ggattggacaacggcatcctgtggctcagctggttcatcagcagcctcatccccctgctc
atctccgcctcgctgctggtggtcatactcaagatggggaacctgcttccctacagcgac
ccttgcgtggtcttcctgttcctggcttcctttgctgtggtaaccatcatgcagtgcttc
ctgatcagtaccatcttctcccgtgccaacctggcggcggcctgcggaggaatcatctac
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactacgtgggcttcggg
gctaaagtcattgtgagcctgttgtccccagtggcgtttgggttcggctgtgagtacttt
gccctgtttgaggagcagggagtgggaatccagtggtccaacctgttgtccagcccctta
gaggaggacagctactccctcaccacctccatctgtctcatgctgtttgactccttcctc
tacggggtcatgacctggtacatcgaggctgtcttccctggccagtatgggatccccaga
ccctggtacttccccttcaccaagtcctactggtgtggagagaaacaagggaagaatata
caagaaagaaaggaaggaaacgcagaagctgtgtgcatcgaagaggagccgtctcacatc
gagcctggtgtttacatcaagaacctagtgaaggtatatagccacggcaacaagctggct
gtggacgggttgaccctgggtttctacgaggggcagatcacctccttcctggggcacaac
ggagccggcaagaccaccaccatgtccatcctgacgggtctgttcccgcccacctctggc
accgcctacatcctgggcaaggacatccgctcggagctcagtgccatcagacagaacctg
ggcgtctgcccgcagcacaacgttctcttcagcatgctgacggtggaggagcacatctgg
ttctatgcccgtctgaagggtctgtctgaggagaaggtgaaggctgagatggagcagatc
gtcaacgacatcggcctgcctcacaaacgccagtgtcgtagcaacacgctgtccgggggc
atgcagaggaagctgtcagtggcgttggcgttcgttggagggtcaaaggtcgtgatcctg
gatgaacccactgctggagtcgacccctacgcacgccggggcatttgggacctgcttctg
aagtatcgtgcaggccgcaccatcatcctctcaactcaccacatggacgaggcggacatc
ttgggcgaccgcatcgccatcatctcccacggcaagctgtgctgcgtgggctcctccctg
ttcctgaagacccagctggggacgggctactacctgaccctggtgaagagagacttcgac
ctgaccctcaactcctgtaggaactcctccagcagcagctctgtctcctacagcaagaag
gtgggcctccctcagccgcaacctcaggccctcacagtcctaaagggggacagtgtttct
gagagcagctctgatgctggactgggtagtgaacctgagagtgaagccaccactattgac
gtaaccatgatctccaatgtgatcttcaagcacgtccccgctgccaggctggttgaggac
ctgggccatgaactcacctacgttctgccctacgaggcggccaaaggtggagccttcgtg
gagctcttccacgagatcgacgaccgcctgtctgacctcggcatctccagctacggcatc
tcagacaccaccctggaagagattttcctgaaagtagcagaggacagtggagtggacgct
gctgaacttcccaactctgatggcaccatcccggctcgtaggcaccgcagacacgcgttc
ggagaccaccagagctgcctgaaacccttcaccgaggacgacgctttcgacttcaacgac
tcagaagaatctcgtgagacggactggctgggaggctcggatggtaaaggctcgtatcag
gtcaaaggctggcgtctgattagacagcagtttgtggcgttgatatggaaacgcttcctg
tatgcccggcgctccaggaaaggcttcttcgctcagatcgtgcttcctgctgtgtttgtg
tgcatcgccctcgtcttcagtctcatcgtccctccgtttggaaagtaccccagcctggag
ctggagcctggcatgtatgaagaacagttcaccttcatcagcaacgacgcccctgaggat
gcagacactaacaagctgctgggtgccctgacaaactacgatggctttggttcactctgt
aactcacctcatgctccttgtaacacgttggatgaggagtgggccattcctgaggtaccg
gagagtgtgagggacatctttatgaatggcaactggagtatggaaaacccctctcctctc
tgtgagtgcagctgtgaaggacgcaagaagatgctacctgaatgcccagcgggagctggt
ggtcttcctcccccacaggtgaaaatcagtgaccaaggtaccctgcaaaatctgactggc
agaaatatctcagattacctggtcaaaacctatgctcagattatcgggaaaagtttgaag
aacaaaatctcggtcaatgaattcagatatggtggattctcattgggcgctaggaacact
cagctcctcccaccaggtgatgatattgatcaggccatctctgagatcagacgacgcttc
cacctggaaagaggcactgctgctgaccgtttccttgccagcttatccagttttatccag
ggactggacactaagaacaacgtcaagatctggttcaacaacaaggggtggcacagcatc
gggtctttcctgaacgtgatgaacaacggaatcctgcgcgccagcctgcccgccggccag
gactccagcaagtacggcatccgtgccttcaaccacccactcaacctcaccaaggagcaa
ctgtcccaggtcgcactgatgaccacctctgtggacgtgctggtgtccatctgcgtgatc
ttcgccatgtctttcgtcccggccagcttcgtagtcttcctcattcaggagagagtcaac
aaggccaaacacatgcagttcatcagtggggtgcagcccttcctctattggctgtccaac
ttcatctgggacatgtgtaactacatcgtccctgctactctggtcattatcatcttcatc
tgcttccaacaagacgcctacgtctcctccaccaacctgcctgtactggctctgctgctg
ctgctctatgggtggtccatcacacccctgatgtacccggcgtccttcttctttaagatc
cccagcacggcctacgtggtgctcacctccgtcaacatcctcatcggcatcaacggcagc
gtctccaccttcgtcctcgagctcttcggcagcaacgagatcggagggatcaacgacatc
ctgaagaacgtgttcctgatcttccctcacttctgtctgggccgaggcctcatcgacatg
gtgaagaaccaggccatggccgacgctctggagaggtttggtgagaaccggttccgttcc
cctctggcgtgggacatggtgggcaagaatctgttcgccatggctgtgcagggcgtggtc
ttcttcactatcaccgtgctcatccaataccgcttctgtatcaaggccagatctttgcgc
accgaccagaaacctatcggtgaggaggatgaagacgtggcaagagagaggcaaaggatt
atgggaggagggggacagtctgacattctggaactcaagcagctgaccaaggtgtacaat
agaaaacagaaaccagcagtggatcgtctttgtgtgggaattcctccaggagagtgtttt
ggtctgcttggagtcaacggagcaggaaagacgagcaccttcaagatgctgactggagac
tcaatagtcacgagtggagaagcttacctggcgggaaagagtgtgttgacggagataaac
gaggtgcaccagaacatgggctactgccctcagtttgatgctatcaatgacctgctgact
ggcagggagcaccttgagttctacgccatcctgaggggggttcccgagaaggaagtgtgt
gaggtggcagagtggggcatccgtaaactaggcctgatcaagtatgtggacaaggcagca
gggagctacagtggagggaacatgaggaaactctccacggccatggcactgatcggtggt
cccccagtggtcttcctggacgagcccaccactggtatggaccccaaggccagacgggct
ctgtggaactgcattctcagtatcgtcaaggaggggcgatcggtggttctcacctcgcac
agtatggaggagtgtgaggccctgtgtacgcggatggccatcatggtcaatgggaggttc
cgctgcctgggcagcgtacagcacttaaagaacagatttggggatggctacaccatcatc
ctccgggtggcaggaccagacccggacctgaggccggtgatggagtttattgagaaggag
cttccaggcagcactctgaaggagaagcacaggaacatgctgcagtatcagctgtcctcc
tccaaaacctccctggcacgcatcttcagcatcctggccaagaacaaggagtggctgcac
attgaggactactccgtttcccagacaactctagaccaagtgtttgtcaatttcgccaag
gaccaaagtgacgaggaccacttaaaagacatttccgtgcacaagcgagaggcggtggca
gtggacattactcagctcaagtctttcctcaccgacgagaaggccagggagagctgtgtg
tga
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integrated database retrieval system
