Oncorhynchus nerka (sockeye salmon): 115137450
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Entry
115137450 CDS
T07952
Name
(RefSeq) host cell factor 1-like isoform X1
KO
K14966
host cell factor 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03083
Polycomb repressive complex
one04980
Cobalamin transport and metabolism
one05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
115137450
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
115137450
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115137450
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
one01009
]
115137450
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115137450
03029 Mitochondrial biogenesis [BR:
one03029
]
115137450
Protein phosphatases and associated proteins [BR:
one01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115137450
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
115137450
HMT complexes
COMPASS/SET1 complex
115137450
MLL-HCF complex
115137450
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
115137450
Mitochondrial biogenesis [BR:
one03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
115137450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
115137450
NCBI-ProteinID:
XP_029529630
EnsemblRapid:
ENSONEG00000032300
LinkDB
All DBs
Position
LG2:29090943..29104543
Genome browser
AA seq
1661 aa
AA seq
DB search
MTGSALQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDELHVYNTATNQW
FIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKKLKAKTPK
NGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELRAGSSVVGWDI
PITYGVLPPPRESHTAVVYTEKDSKKSRLIIYGGMSGCRLGDLWTLDIDTLTWTKPSVNG
TAPLPRSLHSATTITNKMFVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDSMAWESV
VMDTLEDNIPRARAGHCSVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYLETERPHAPSR
VQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPAATAVTSPALNAATSLQGNLPKGPAT
AAPSAQNLPHTGITIVPQASSPTILPNIPRSPLAASTAHGPAILKVAAPPSGTGTSLVTV
RPNQAGKSPVTLLPGVRMVVPAQTTQGTPVGSSPQMSGMAALAAAAAATQKIPPSSSTVL
NIPAGATLVKTMAGSTTVKMASPLMVSNPATRMLKTAAAQVGTATVSSPNTPNRPIITVH
KSGTVTVAQQHQVVTTMVGGVTKTITLVKSPLTMGGSGTLQISNLGKMMSVVQTNPVQTS
AVTGQASTNPLTQLIQTKGSLPAGTILKLVTSADGKPTTIITTSQAGGTGNKPTILNISG
MSPTITKQGTTIIKTIPMSAIMTQPGATVTSSTGKTPYTIISTKMMTTGTPGKIITTMPK
LGTATGQQGLTQVVLKGAPGQPGTILRTVPMGGVRLVTPVTMSSVKPNITTLVVKGTTGV
TTLGTVTGTVSSSLAGSIVASANASLATPITTLGTIATLSSQVINPTAITVSAAQTSLTT
ATTLSASTTSANQPTQVTLITTPSGVEAQPVQDLPVSFLASPTSEQPSSTEVGDVPGTVT
MVCSNPPCETHETGTTNTATTASSDIGGVQRVCSNPPCETHETGTTNTTTTASTNMGGAM
RTTTSSSLGTATGNQGPENLSTGTTFTPTTACSNMGSAQTGTVQSPKPAVGSTMCLNPPC
ETHETGTTNTATQSLSSMGNGQTGTVQRVCSNPPCETHETGTTSTPSQASSNMAGNQTGT
AQRVCSNPPCETHETGTTNTATTATADGADSATSSTETPSTTASETTPATIQSRAITTVT
QSTPAPGPSVPSILSITEDAAGSTEEPMQTDAATEGGETAMETGLSPELSEGQMGTGLSA
EELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMNEGNSGSTGQQAITIPIVLTQQ
ELAALVQQQHQLQEAQAQALAQQQGNAQALPTEGLAPADSLNDPASESNGHPEMAAAVSS
AVASLLPRTSTETLAPSSTFSVASPAKLQAAVAEVANGIEGGKLNPQPAPIKTLVKKENQ
WFDVGIVKVTNMVVTHFIPEDDSQVEDDSGAIPDHNQMKKMELQPGTAYKFRVAGINACG
RGFFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSTQ
TAEPKASTPAQLAFMRVYCGPNPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPA
TQVRWLQESSKDGASAKLAPKRPVSSPDAKAAGQKKARTDP
NT seq
4986 nt
NT seq
+upstream
nt +downstream
nt
atgactggttcagctctacagccacgatggaagcgggtactgggatggtctggccctgtc
cctcggcccagacatggtcacagagccgttgctataaaggaattgatggttgtttttgga
ggaggaaatgaaggaattgtggatgagttgcatgtctacaacacagcaacaaaccaatgg
tttatccctgcggttcgtggtgatattccccctggatgtgctgcatatggttttgtttgt
gatggcacccggcttctggtgtttggtggaatggtggaatatggaaaatacagcaatgat
ctctatgagctacaggccagcagatgggaatggaaaaagttgaaagctaagactcccaaa
aatggcccacctccctgtcctcgacttggccacagtttctcgctggtgggtaacaagtgc
tacttgtttggaggactggctaatgacagcgaggaccccaaaaacaacatccccagatac
ctgaatgatctgtacaccctggagcttcgtgctggctccagtgttgtgggctgggatata
ccaattacttatggtgttttgccacctcctcgcgagagccacactgccgtagtgtacaca
gaaaaggacagcaagaaatctcgcctgatcatctatggagggatgagtggctgtcgtctg
ggagatctatggacacttgacatcgacaccctgacctggactaagccatcagtgaatggc
acagcacctctgcccaggagtcttcactctgccaccaccatcacaaacaagatgtttgtg
tttggggggtgggttcccctggttatggatgatgtgaaggtggccacacatgagaaggaa
tggaagtgcacaaacacactggcctgcctaaatcttgactccatggcctgggaatcagtg
gtgatggatactctggaggacaatatcccaagggcccgggcaggacattgctcggtggcc
atcaactctaggttgtatgtctggagtggccgtgacggttaccgtaaagcatggaacaac
caagtctgctgtaaagacctctggtaccttgaaacagagaggccacacgctccctcgaga
gtgcagctagtccgtgccaacaccaactccctggaggtaagctggggcgctgtgtccact
gcagacacctatctgctgcagctacaaaagtacgacattcctgctgccactgctgtgacc
tcgccggccctcaatgccgccacctctctgcaagggaacttgcctaagggcccagccaca
gctgctccctctgctcagaacctaccacacacaggtatcactattgtgccccaggcttct
tcccctacaatccttcccaacattcccagaagcccgctggctgcctccacagctcatggg
ccagctatcttgaaggttgcagcgcctccgtctggcacgggtacctcccttgtcactgtg
cgacccaaccaggctgggaaatcccctgtcacacttcttccaggagttcgcatggttgtt
cctgcccagaccacccaaggaacaccagtcggcagcagccctcagatgagtggcatggca
gctttggctgcagctgcagcagccacacagaagatcccaccctcttcaagcactgtactc
aacattccagcaggtgctacccttgtcaaaaccatggctggctccaccacagtcaaaatg
gcatctcctctcatggttagtaacccagccactcgcatgctgaagacagctgcagctcag
gtgggcacagcgaccgtatcgtcacccaacacgcccaacagacctatcatcactgtgcac
aagtcgggcacggttaccgtagcccagcaacaccaggtggttaccaccatggtgggagga
gtcaccaagaccatcaccctggtcaagagccccctcacaatgggaggcagcggcactttg
cagatctccaaccttggcaagatgatgtctgtggtacaaaccaatccagtgcagacatcg
gctgttacaggccaggcttccactaaccctctcacacagctcatacagaccaagggttct
ctccctgccggcaccatactgaagctggtgacctcagcggacggcaagcccaccaccatc
atcaccacatcccaggcgggaggaaccgggaacaaacccaccatcctgaacatcagcggc
atgtcacccaccataaccaaacagggtaccaccatcatcaagaccatccctatgtctgct
attatgacccagcctggagccacagtgaccagcagcacagggaagacgccctataccatc
atcagcaccaagatgatgaccactggcactccaggcaaaatcatcactaccatgcccaag
cttggcactgcaactggccagcaagggctgacacaggtggttttgaagggagccccgggc
caacctggcaccattctgcgcactgtaccgatgggtggagtcagactcgtcaccccggtc
acgatgtcttctgtcaagcccaatataactacactggtcgtcaagggaacaactggtgtc
accaccctggggactgtcacagggacagtctcctccagtctggcagggagcattgtagcc
agtgccaatgcctctctggcaactccaatcaccacccttggcaccatcgccaccctgtcc
agccaagttatcaaccccactgccatcactgtgtcagcagcccagaccagtctgaccaca
gctactaccctttccgcttccaccacgtcagcaaaccagcctacccaggtgactctcatc
accacccccagcggggttgaggcccagccagtgcaggacctgcctgtgtccttcctggcc
tcccccacctctgagcagccctcttccactgaggtcggggatgtccctggcactgtcacc
atggtctgctccaaccccccctgtgagacccacgaaacaggaaccaccaacaccgcaacc
acagcctcctccgatataggtggggtgcagagggtctgctccaaccccccctgtgagacc
cacgagacgggcaccaccaacaccacaacgaccgcctccaccaacatgggcggggcaatg
aggacgaccacctcttcttccctcggaacagccacaggcaaccagggaccagagaacctg
agcaccggcaccacattcacccccaccacggcatgctccaacatgggctcagcccaaacc
ggaactgtgcagagtcccaagccagccgtgggctctacgatgtgcttaaacccaccctgc
gagacacatgaaacgggcacaaccaacactgccactcagtccttgtccagcatgggtaat
gggcagactggcactgtacagagggtgtgctcaaacccaccctgcgagactcacgaaact
gggaccaccagcaccccgtcccaggccagctcaaacatggccgggaaccagacggggacg
gcgcagagggtgtgttccaaccccccctgtgaaacccacgagactggcaccaccaacacg
gcaactactgccacagcagatggagcagacagtgccaccagcagtacagagactccttcc
accactgcatcagaaacaaccccagccaccatccagagcagagccatcactactgtgact
cagtccacaccagccccggggccctcagtaccttccattttgtcgatcactgaggatgct
gcgggttccacagaagagcccatgcagacagacgcggccacggaggggggagagaccgct
atggagactgggctgtccccagagctgtcagagggacagatggggacaggtctgtctgca
gaggagctggctgtgaccgcagcggcggaggcagcggcgcaggctgcagccacagaggag
gcccaggccctggccattcaggcagtcctccaggcagcacagcaggcagtcatgaacgag
ggtaattctggctcgaccggacagcaggccatcacaatccccatcgtcctgacccagcag
gagttggcagccctggtccagcagcagcaccagctccaggaggctcaggcccaggctctg
gcccagcagcaaggaaatgcccaggccctacccactgagggccttgcccccgcagacagc
ctcaacgaccctgcgtctgagagcaacggacaccccgagatggctgcagctgtctccagc
gctgtggcatcactgctgccgcgcacatccactgagaccctggccccctcaagcacattt
tctgttgccagtccagccaagctgcaagctgctgtagcagaggtggccaatggcattgag
ggtgggaagctaaaccctcaaccagcccctatcaagactcttgtaaaaaaagagaaccag
tggtttgacgttggcattgtcaaggtgacaaacatggtggttacgcacttcatcccagag
gacgattctcaagtggaggatgactcgggtgccatcccagaccataaccagatgaagaaa
atggagctgcagcctggcacagcctacaagttccgtgtcgctggtatcaacgcttgtggt
cgtggtttcttctcagagatatctgcttttaagacctgtttaccaggcttccctggagca
ccttgtgccatcaaaatcagcaagagcccagatggtgcccacctcacctgggagcctccc
tctgtgacatcagggaagataattgagtactctgtgtacctggccatccagagcacccag
acagctgagcccaaagcctccaccccagcccagctggccttcatgcgggtgtactgtggg
cccaacccctcctgcttggtgcagtcctccagcctctccaatgcccacatagactatacc
accaagcccgccatcatcttccgcatagctgcgcgcaacgagaagggctacggccctgcc
acacaagtccgatggctgcaagagtccagcaaagatggagcctcggcaaaacttgcccca
aaaagaccagtttcctcgcctgatgctaaggctgctggtcaaaagaaagcaagaacggac
ccgtga
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integrated database retrieval system
