Oncorhynchus nerka (sockeye salmon): 115137506
Help
Entry
115137506 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: Down syndrome cell adhesion molecule-like protein 1 homolog
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
one04515
]
115137506
Cell adhesion molecules [BR:
one04515
]
Immunoglobulin superfamily
Other
115137506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Ig_2
ig
C2-set_2
V-set
Pur_ac_phosph_N
Interfer-bind
Ig_6
fn3_2
DUF1461
ChitinaseA_N
Motif
Other DBs
NCBI-GeneID:
115137506
NCBI-ProteinID:
XP_029529696
LinkDB
All DBs
Position
LG11:23878669..24034572
Genome browser
AA seq
1712 aa
AA seq
DB search
MWLVTLFLLYSFQEVNSEDVVSTRLYFVNASLQRVTFSSSVGVSLPCPAGGAPHAVLRWY
LATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSYIHDNDYFCTAENQAGKIRSPSIRIK
AVFREPYTVRVADQRSMRGNVAVFKCLIPSAVQEYVSVVSWEKDTVSMVPGNRFFLTSFG
ALYISEVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPTESTPSVLDSFQSGEVQVG
HNVELPCIASGYPNPTIRWLKDGRPLPADSRWTRRLTGLTVSDLRLGDSGNYICEVTNSF
GSKEVTGHLNVIEPLRVTLSPKNLKTGISSTVILSCSVQGSPHFTLSWYRNTEPVLPDQH
FSIQGAHNETLFISAAQKRHSGAYQCFATRKGQTAQDFSIILLEGGLNPKMILVRKLNLI
FWWKLMYDEKLCLYFPVGPCPIISLVIPAIHPTFILPCIVLSPVPAMITSHPNTTMAIKG
QIKELNCTARGEWPIIIRWERGDTVIDPDRNPRYAITTSPNEKSDEVLSTLKLKPAERGD
SVFFSCHAINSYGEGRGLIQLTVQAHADPWELKHATRKISPTNNQANIVDLHPAQVYSIR
MFSYNKIGHSQASKELTISTEEAQPDGPPMEVFLQPMTSQSIRVTWKAPRKELQNGVIRG
YQIGYRENGPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI
NATTLEDVPSQPPQTVRAISVTSDEAVITWAEPPRLTLHGVLKGYRVVFWSLFPDGEWGE
MQNITTTREQVELRGLEKFTNYSVQVLAYTQAGDGVRSNVLYIQTREDHPGPPAGIKAVP
SSTSSVVVSWLPPHKPNGIIRKYTIYCSSPGSGQPAPSEYEANPELLFYRVTHLNRGQQY
LIWAAAVTTAGRGNISDKVTVEPAGKAPAKILSFGGTVTTPWMKEVRLPCSSVGEPTPTI
KWTKDSEDTAIPVTLDGQRLIMVNGTLVLRSVKAEDSGYYTCTATNTLGFDTIIVNLLVQ
VPPDQPRLTVSTTSPTSITLAWIPGDNGGSSIRGFVLQYSVDNMEGWRDVFISSSERSFK
LDNLRCGTWYKVKLAAKNSVGAGRISEIIEAKTHGREPQFNNEQPVFTHVNSTHARLNLQ
GWASGGCPITAVLLEFRPKGNWAWQNVRTNATADVFLAELREATWYELKMKACNSAGCGN
QSSQFATLDYDGSTIPPIKSARPEGDDVKKLFSIGCPVILVTLVLALLFIIRKKRKEKRL
KRLRDAKSLAEMLISKNNRSFDTPVKGPPQGPRLHIDIPRVQLLIEDKEGIKQIGEDKAT
IPVTDTEFSQNVNPQSFCTGVSVHHPALIQNTGPLIDMSDIRPGTNPVSRKSVKSAHSTR
NRYSSQWTLTKCQSSTPARTLTSDWRTVGSQHGITVTESDSYSASLSQDTDKGRNSMVST
ESASSTYEELARAYEHAKLEEHLQHAKFEITECFISDSSSDQMTTGTNDNGDSMTSMSTP
SETGLCRFTASPPKPQEYDRGRPTNVAVPIPHRANKSEWTGKSDYCNLPLYMKTDPFFRK
QSELHDPCPVVPPREAPIRSLAQRAYHTQGRHMTLDSSKQQQALTVGHAGLAGLSASGGA
SGSGGGGVGGATGGPSGGSSTTSLSQRTLTMPGSSSSSAQSAAAAATASASGGATGGDSR
DPLLESSSSGLGRLERQKQAAGGAYSKSYTLV
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atgtggctggtaactttattcctgctgtactctttccaagaagtgaacagtgaggatgtg
gtctcgacgcggctgtactttgtaaacgcctccctgcagcgggtgaccttctccagctcg
gtcggggtgtccctgccctgccctgcgggcggcgcaccccatgccgtcctgcgctggtac
ctggccaccggcgacgacatctacgatgtgccccacatccgccacgtgcacgccaacggc
accctccagctctaccctttctcgccctccgccttcaacagctacatccatgacaacgac
tacttctgcaccgcagagaaccaggccggcaagatccgcagccccagcatccgcatcaaa
gcagtgttcagggagccctatacggttcgggtggcagaccagcggtccatgcggggcaac
gtggccgtgttcaagtgcctcatcccctcggccgtgcaggagtacgtcagtgtggtgtcc
tgggagaaagacaccgtctccatggtgccagggaaccgttttttcctgacgtcgttcggg
gccctgtacatatcagaggtccagaaggaagatgccctgtccacctaccgctgcatcacc
aagcacaaatacagtggagagactcgccagagcaatggagccaggctgtctgttatggac
cctacggagtccaccccctcagtgttggacagtttccagtccggagaggtccaggtgggg
cataatgtggagctgccctgcatcgcctcgggctaccccaaccccaccatccgctggctg
aaggacgggcgcccgttgcccgccgactcccgctggacgcgccgtctcacgggcctgacg
gtcagcgacctgcgtctgggcgacagcggaaactacatctgtgaggtcaccaacagcttc
ggctctaaagaggtgaccggtcatctcaacgtcatcgagccgttgagagtgactctatct
cctaagaacctgaagacgggcatcagcagcacggtgattctgtcgtgttccgtgcagggt
tctccccacttcaccctgtcctggtaccgcaacacagaacccgtcctccccgaccagcac
ttctccatccagggggcccacaacgagaccctgttcatctccgctgcccagaagagacat
tcgggagcctaccagtgcttcgccacccgcaagggccagaccgcacaggacttctccatc
atactgctggagggaggattaaaccctaaaatgatcttagtgcgaaagttgaatcttata
ttttggtggaaactcatgtatgatgaaaaactctgcctgtatttccctgtcggaccctgt
cccattatttcccttgtcattcccgccatccatcccaccttcattcttccctgcatcgtt
ctctctccagtcccagcaatgatcacgtcgcaccccaacaccaccatggccattaagggc
cagattaaggagctgaactgcacagcgaggggggaatggcctatcatcatccgttgggag
cgcggtgacacggtcatcgaccccgaccgtaaccctcgctacgccatcaccaccagcccc
aacgagaagagtgacgaagtattgtctacgctgaagctgaagccagcagaacgtggtgac
tcggtcttcttctcctgccatgccatcaactcctatggagagggacggggactcatccag
ctcactgtgcaagcacacgcagatccatgggagttgaagcatgccacccgtaagatctct
cccaccaataaccaggccaacatcgtggatttacaccctgcccaagtctacagcatccgc
atgttctcctacaataagatcggacacagtcaagccagcaaggagctcaccatcagcacc
gaggaagcgcagcccgatggtcctcctatggaggttttcctccagcctatgacctcgcag
agcatccgcgtcacctggaaggcccctaggaaggagcttcagaacggagtgatccggggt
taccagattggttaccgtgagaacgggccgggcagtaacggccagtacagtatcgttgag
atgaaggctacaggggacagtgaggtgtacaccctggacaacctgaagaagtttgcccaa
tatggagtggtggtccaggccttcaacagggccggcacaggcccctccagctctgagatc
aacgctaccacactggaagatgtgcccagccagccgccccagaccgtgcgggccatctcg
gtgacatctgacgaggcagtgatcacctgggcggagcccccgcgtctgacactgcacggc
gtgctgaagggttaccgtgtggtcttctggtccctcttccccgacggagagtggggagag
atgcagaacatcaccacaacccgtgagcaggtggagctgagagggctggagaagttcact
aactacagtgtgcaggtgctggcctacacccaggctggggacggggtccggagcaatgtg
ctgtacatccagacccgcgaggaccaccctggccccccggctggcatcaaagctgtgccc
tcatccaccagcagtgtggtggtttcctggctacccccgcacaagcccaatggaatcatc
cgcaagtacaccatctactgctccagccccggatcaggccaaccagcccccagcgagtac
gaggccaaccccgagctgctgttctaccgggtcacccacctgaaccgcggacagcagtac
ctcatctgggccgccgccgtcaccaccgccggacgggggaacatcagcgacaaggtcact
gtggagcctgctgggaaggccccagctaagatcctatcgttcggaggtacagtgaccact
ccctggatgaaggaggtgaggctaccctgcagctcagtgggcgaacccacccccaccatc
aaatggaccaaagacagtgaggacacggccatcccggtgactctggacggtcagaggctc
atcatggtcaatggcacgctggtcctacgctcggtgaaggctgaggattctgggtactac
acgtgcacggccaccaacacgctgggctttgacaccatcatagtcaacctgctggtgcaa
gttcctccggaccagccccgtctgactgtctccaccacctcccccacctctatcaccctg
gcctggatcccaggggacaacggaggatcctccatcagaggtttcgtgctgcagtactcg
gtggacaacatggaggggtggagggatgtgttcatcagttccagtgagaggtccttcaag
ctggacaacctgcgctgtggcacctggtacaaggtcaaactggccgccaagaacagtgtg
ggagcgggacgcatcagtgaaatcatcgaggctaagacccatggacgagagccccagttc
aataacgaacagccggtgttcacccacgtcaactctacccacgcccggctcaacctgcag
ggctgggcgagcggtggctgccctatcacggccgtgctgctggagttcagacctaagggc
aactgggcgtggcagaacgtgcgcaccaacgccacggccgacgtgttcctggctgagctc
cgcgaggccacctggtacgagctgaagatgaaggcgtgtaacagcgccggctgcgggaac
cagagctctcagttcgccacgctggactacgacggcagtaccatccctcccatcaagtca
gcgcggccggagggcgacgacgttaagaagctcttctccatcggctgccccgtcatcctg
gtcactctggtcctcgccctgctcttcatcatccgcaagaaacgcaaagagaagagactg
aagagactgagagatgccaaaagcctggctgagatgctgatcagtaagaataaccggagc
tttgacacccctgtgaaagggcccccccagggcccccgactccacatcgacatccccaga
gtccagctgctcatcgaggacaaggaaggcatcaagcagatcggtgaagacaaagccacc
atcccagtgacggacacagagttcagccagaatgtgaatccacagagcttctgtacgggc
gtgtctgtgcatcaccccgccctcatccagaacaccggccctctgattgacatgtccgat
atcagaccagggaccaacccggtgtcgaggaagagcgtgaagtcggcccacagtacgagg
aaccgctactccagccagtggaccttgaccaagtgccagtcgtctacgcccgcccgtacc
ctcacctccgattggcgcaccgtgggctcccagcatggcatcaccgtcaccgagagcgac
agctacagcgccagcctctcacaggacacggataaggggcgtaacagcatggtgtccaca
gagagcgcatcctccacctacgaggagctggcgcgggcctacgaacacgccaagcttgag
gagcacctgcagcacgccaagtttgagatcaccgagtgcttcatctccgacagttcctca
gaccagatgaccacgggcaccaacgacaacggcgacagcatgacctccatgagcacgccg
tccgagacgggcctgtgtcgcttcaccgcctcgccacccaaaccccaggaatacgaccgc
ggaagacctaccaacgtagccgtgcccatcccccaccgcgccaacaagagcgagtggact
ggcaaaagtgactactgtaaccttcccctttacatgaagacagaccctttcttccggaag
cagtcggagctgcatgacccgtgcccggtggtgccaccccgcgaggcccccatccgcagc
ctggcccaacgggcgtaccacacccagggccgccacatgactctggactcctccaagcag
cagcaggctctgactgtgggccacgcaggcctggcaggactcagcgcctcagggggagca
tcagggagtggtggtggtggtgtaggaggggcgactggagggccgtctggtggttccagc
accacctccctgtctcagaggactctcaccatgcccggttcctcctcttcctctgcccag
agcgctgctgctgccgctaccgcctcggccagcgggggagccacagggggagactccaga
gaccctctgctggagagcagctcgtcaggcctgggcagactagagagacagaagcaggcg
gctggcggggcctactccaaatcgtatacactggtgtag
DBGET
integrated database retrieval system
