Oncorhynchus nerka (sockeye salmon): 115137629
Help
Entry
115137629 CDS
T07952
Name
(RefSeq) rab5 GDP/GTP exchange factor-like isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
115137629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115137629
Membrane trafficking [BR:
one04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
115137629
Protein recycling
Other Rab GTPase associated proteins
115137629
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Rep_N
Motif
Other DBs
NCBI-GeneID:
115137629
NCBI-ProteinID:
XP_029529810
LinkDB
All DBs
Position
LG11:14730511..14735805
Genome browser
AA seq
498 aa
AA seq
DB search
MSHGPESRGIHVDQSELLCRKGCGFYGNVAWQGLCSKCWREEYQQTRHKQIQEDHALAER
LQMEDEAAYANNHQGAAQSQPAIAPFSKFEERKTKEKSRKVNTVTKFFTPSAKTPPKKDS
VPGEAQSTPSPSVSRKPLETDRTTREFIDFLKTLKPGREIFKQCRAFTESMACKRDLGAD
ELSECVQDFYQNLSDRLQTHYKGSSERVESVMDEVERYMMTRLYDEVFCPETTDDEKKDL
AVQKRISVCVGCRALHWVTIEMLCVPVDEEIPEVSDNVVKAITDVIEMDSKRVPRDKLTC
ITRCSKHIFNAINTTKKEAASADDFLPTLIYIILKANPPRLQSNIQYITRFCNPSRLMSG
EDGYYFTNLCCAVAFIEKLDGQSLNLSAEVFELHMSGQASPQRPQAAPSPPGSAAFSEMN
ERLDLLTGLGVRQERVVEGARRLEDDLIDWRDEVEHKVQDVLERFPLEMHPPASSAIDAD
NVENDLLPPPLQPQLFAG
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgagccatgggccggaaagtcgtgggatccatgtggaccagtcagagctgttgtgtagg
aagggatgtggtttctatggcaatgtggcctggcagggcctctgctccaagtgctggcgg
gaggagtaccaacaaaccagacacaaacagatccaggaggaccatgctctggcagagagg
ttacagatggaggatgaggcagcatatgctaacaaccaccagggggcagcccagtcccag
cctgccatcgcacccttcagcaaatttgaagagaggaaaactaaggagaagtcacggaaa
gtcaacacagtgactaagtttttcactccctcagcaaagacaccacccaagaaagactct
gtccctggcgaggcccagtcgacccccagcccctcagtgagccgcaagcccttagagacg
gaccgcaccacacgagagttcatcgacttcctcaagacactgaaacctggcagggagatc
ttcaaacagtgccgggccttcacagagagcatggcctgcaagagggacctgggtgctgat
gagctgtctgagtgtgttcaggacttctaccagaacctgtcagaccgcctgcaaacacac
tacaaagggtcgtcggagcgcgtggagagtgtgatggacgaggtagagaggtacatgatg
acacgtctctacgatgaggtcttttgtcctgagaccacagacgatgagaagaaagacctg
gctgttcagaagagaatcagtgtgtgtgtgggttgcagggccttgcattgggtcaccatt
gagatgctgtgtgtccctgtggatgaggagattcctgaggtgtctgataatgtggtcaaa
gccatcacagacgtgatagagatggactcgaagcgtgtgcccagggacaagctgacctgc
atcacgcgctgcagtaagcacatattcaatgccatcaataccaccaagaaggaggcagca
tctgctgatgacttcttgcccaccctcatctacatcatcctgaaggccaaccctccacga
ctgcagtccaacattcagtacatcacccgcttctgtaaccctagccgcctcatgagcgga
gaggacggatactactttaccaacctgtgctgtgcggtggccttcatagagaagctggat
ggccagtctctgaacctaagcgctgaggtgtttgagctccacatgtcaggccaggcgtcc
ccccagcggccccaggctgctccctcccccccaggcagtgctgctttcagcgagatgaac
gagcgtctggacctgctgacggggctgggcgtgaggcaggaacgcgtcgtggagggagct
cgccgcctggaggatgacctcatcgactggagggacgaggtggagcacaaagtgcaggat
gtgttggagaggttccccctggaaatgcacccccccgcctcttctgccatagacgctgac
aacgtggagaacgacctcctgcctcctcctctccagccgcagttgtttgccggctga
DBGET
integrated database retrieval system
