Oncorhynchus nerka (sockeye salmon): 115137737
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Entry
115137737 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: roundabout homolog 1-like
KO
K06753
roundabout, axon guidance receptor 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
115137737
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
one04515
]
115137737
Cell adhesion molecules [BR:
one04515
]
Immunoglobulin superfamily
ROBO family
115137737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
fn3
Ig_2
V-set
FN3_DSCAM-DSCAML_C
C2-set_2
Pur_ac_phosph_N
Ig_5
Toxin_19
Motif
Other DBs
NCBI-GeneID:
115137737
NCBI-ProteinID:
XP_029529924
LinkDB
All DBs
Position
LG11:complement(2165326..2290989)
Genome browser
AA seq
1565 aa
AA seq
DB search
MHAITLGIEHIVNKALWCRPHVNPFSSSLSAVLRDDFRQNPADIMVAAGEPAVLECMPPR
GHPEPSISWKKDGANIDDRDERITIRGGKLMITNARKSDAGKYVCVGTNMVGERESEIAE
LTVLERPSFVKRPGSQVVLVDQSVEFRCEARGDPVPTVRWRKEDGELPKGRYEIREDHTL
KIRRLTSADMGSYTCVAENMVGRAEASATLTVHGKTTPPVFWCGPRNQVGREWGGTVPSR
XWATGNPSTAIFWQREGRPNLLFSYQPPQPSSRVSVSQTGDLTITDAERSDVGYYSCQAL
NIAGSVITKALLEVTDVVSDRPPPVVRQGPTNQTVSVDGTVVLSCLATGKPTPTIMWRKD
GVLVSTHDSRVKQLDTGALQIRYAKLGDTGMYTCIASSPSGEASWKAYLDVQEFGVPVQP
ARPTDPNLIPSAPFKPEVTDVTRTSVTLSWKPNFSGATPTSYIIEAFSHASGSSWQTLAE
HVKTESYVLKGLKASAVYLFLVRAANAYGLSDPSPITDTVKTQDIPPTSQGVDHRQIQRE
LGEVVIHLHNPTILSSSSVRVQWTVEQQSQYIQGYKVMYRASPEGQQRSDWAVFEVRTPG
EDSTVVPQLRKGVTYEFKVRPFFNEFQGTDSEVKIAKTLEEAPSAAPRGVTVTESGDNGT
AIMVSWQPPPEEEQNGVVQEYKIWCLGNESRYHFNRTVDGSTFSLLIPSLAPGIRYSVEV
AASTGAGPGVKSDVTFFQIDSSGHVTEGVLEPENTLSQQISEVVKQPAFIAGIGAACWII
LMVFSIWLYRQRKKRSGLSTNYAGIRKVPSFTFTPTVAYQRGGEAVSSAGRPGLLNIGES
ATQPWLADTWPNSCSNHNDCSMNCCTAGQGNSDSNLATYSRPADCIANYNNQMESKQTNL
MVPEGGVYGDVDLSNKINEMKTFNXPNLKDGRFVGPGGQPTPYATTQLIQSSILGNNINT
DRGVGVGGGGEANEKHGWKPTPAQGQKQQEMTSQLHQYNIMEQNKLNKDHYRGGDSPMAT
TIPYNQAHEAHTVGSHNSSDHGSSSTSGSQGQKKGVRTPKLPKQSAMNWADLLPPPPANP
PPCRNMEEYSLSMNESYDPDMQCSLPPSRMYLQPDELEEEEEMERGPTPPVRGAASSPAA
VSYSHQSTATLTPSPQEELQPMLQDTTDSMVSGHERRRHVVSPPPRSLSPSHTYGYISSP
MSLDTDGMEEEEEEEEMLEEEEEEEEGDKTDAEVAKVHHHHTHPHHPHHPHHPQQMHTRR
LLLRGLEQTPASSVGDLESSVTGSMINGWGSASEEDNASSGRSSAVSSSDGSFFTDADFA
QAVAAAAEYAGLKVAKYPNPTQGQEGGPGARKYQMTPSGHRPGSPPSTDSNMSTANMHKR
PPKKQKQHPAAGHPGLQRREVYAEDLPPPPIPPPAGLKSPTHPSKTALEARGMMSPKAGE
GRDRRGDSGGGYRPREGSDPRTSSSERRETQDRQKIPRAGKGNKQEGGSTKARQHPGPED
ILPYSRPSFPTVHSPRDRDPSSSSSMSSRGSGGRRRGEGGPGARRNPNDMGAFQPGDDDL
EMVET
NT seq
4698 nt
NT seq
+upstream
nt +downstream
nt
atgcacgctatcacccttggtatagagcacattgtcaacaaggccttgtggtgccgacct
cacgttaaccctttctcttcctctctttctgcagtactacgtgatgacttcagacagaac
cctgctgatataatggtggcagcgggcgagcctgcagtcctagagtgtatgccccctcgc
gggcatcctgaacctagcatatcctggaagaaggacggtgccaacattgatgacagagat
gaacgaatcactatcaggggaggaaagctgatgataaccaatgccagaaaaagcgatgct
gggaagtatgtgtgtgtcgggaccaacatggtgggagagagggagagtgagattgctgag
ctgactgtgctcgagcgacccagctttgtgaagcgtcccggcagccaggtggtgctggtg
gaccagagcgtggagttcaggtgtgaggcccggggcgacccagttcccaccgtccgctgg
aggaaagaggacggagagctgcctaagggaagatatgagatccgtgaggaccacaccctg
aagatccgtcgtctgacctctgcagacatgggttcttacacctgcgtggcagagaacatg
gtgggcagggcggaggcgtcggccaccctcaccgtccacggtaagaccacgccccctgtg
ttttggtgcggccctaggaaccaggtggggcgggagtggggcggaaccgtaccttccagg
tgatgggcaacaggcaacccctcaactgccatcttctggcagagagagggccgcccgaac
ctgctcttctcctaccagcccccccagccgtctagtcgcgtctccgtctcccagacgggg
gacctgactatcacagatgcagagcgctcagacgtgggctactacagctgccaggccctc
aacattgctggctctgtcatcaccaaagccctgctggaggtcactgacgttgtgtctgat
cgcccacctccagttgtccgccagggtccgaccaatcagacagtctctgtggacgggaca
gtggttctgagttgcctagcaacgggtaagcccacccccaccatcatgtggaggaaggac
ggggtgttggtgtccactcacgactctcgggtcaaacagctggacacgggtgcactgcag
atccgctacgccaagctgggtgacacaggcatgtacacatgcatcgcctccagtcccagt
ggcgaggcctcgtggaaggcctatctggatgttcaagagtttggtgttccagtacaaccg
gccagacccactgaccccaacctgatccccagcgcccccttcaaacctgaggtcactgac
gtcacccgcacctccgtcactctgtcctggaagcccaacttctcaggagccacgcccacc
tcctacatcatagaggccttcagtcatgcatcaggcagcagttggcagaccctggcagaa
catgtgaagactgagtcgtatgtactgaagggcctgaaggccagtgctgtctatctcttc
ctggtccgagctgctaacgcctacggcctgagtgaccccagccccatcactgacaccgtc
aaaacacaagatatcccccccaccagtcagggagtggaccaccgtcagatccagagggag
ttaggagaggtggtcatccaccttcacaaccccaccatcctctcctcctcctctgtcaga
gtgcagtggacggtggagcagcagtctcagtacatccagggttataaggtgatgtaccgt
gcctctccagagggccagcagaggagtgactgggctgtgtttgaggtgagaaccccaggg
gaggacagtactgtggtgccccagctcaggaagggagtcacttacgagttcaaagttcgg
cccttcttcaacgagttccagggaacagacagtgaggtcaagatagccaagactctggag
gaagctcctagtgcagcccctcgtggggttaccgtcacagagagtggggacaatgggacc
gccatcatggtctcctggcaaccgcctccagaggaggagcagaacggggtggtccaggag
tacaagatctggtgtttggggaatgagagcagataccatttcaaccgtacggtggatggc
tctaccttctccttgctgatccccagcctggctccagggatccgttacagtgtggaggtc
gcagccagcactggggcaggcccaggggtcaagtctgatgtcaccttcttccagatagac
tcatcaggacatgtgacggagggtgtgttggagccagagaacaccctgtcccaacagatc
agtgaggtggtgaagcagccggccttcatagcagggataggagcggcctgttggatcatc
ctcatggtgttcagtatctggctctaccgacagcgtaagaagaggagtggcctcagcact
aactacgcaggcatccgcaaggtgccatcttttaccttcactcctacagtggcataccag
agaggtggagaggctgtcagcagtgctggaaggccaggtttgctgaacattggggagtct
gctacccagccctggttggctgatacctggcccaactcctgctccaatcacaacgactgt
agcatgaactgctgcactgcaggacagggcaacagtgacagcaacctggctacatacagc
cgcccagccgactgcatcgccaactataacaaccagatggagagcaagcagaccaacctg
atggtgcctgagggaggagtgtacggagacgtggacctctccaacaagatcaacgagatg
aagaccttcaacngccccaatttgaaggacggacgcttcgttgggccagggggacagccc
accccgtacgccaccacacagctcattcagtcttctatcctgggaaacaacatcaataca
gacagaggggtaggagtgggagggggaggggaggcaaacgagaaacacggctggaaaccc
acccctgctcaggggcagaagcaacaggaaatgacctcacagctccaccagtataacatc
atggagcagaacaagctgaacaaggaccactacagaggaggggacagtcccatggctacc
accatcccctataaccaggcccacgaggcccacaccgtgggctcccacaacagctctgac
catggcagcagcagcacctccgggagtcaaggtcaaaagaagggagtgcgcacccccaaa
ctacccaaacagagtgcaatgaactgggctgaccttctgcctcctccccctgctaaccca
cctccctgccgcaacatggaggagtactccctgtctatgaacgagagttatgacccagat
atgcagtgctccctgcccccctcccgcatgtacctgcagccagacgaactggaggaggag
gaggagatggagaggggtcccactccacccgtcagaggtgctgcctcgtcccctgccgcg
gtgtcctacagccaccagtccacagccaccctcaccccctcgccccaggaggagctgcaa
cccatgctccaagacacaacagacagcatggtctctggacacgaacgcagacgccatgta
gtgagcccccctccccggtccctctccccctcacacacctatggctacatctccagcccc
atgtctctagacacagatggcatggaggaggaggaggaggaggaggagatgttggaggaa
gaggaggaagaggaggaaggggacaagacagacgcggaggtggccaaggtgcaccaccac
cacacccaccctcaccaccctcaccacccccaccacccccagcagatgcacaccaggagg
ctgctgctgcggggcctggagcagacgccagcctccagcgtgggggacctggagagctct
gtgacgggctccatgatcaacggctggggttcagcctccgaggaggacaacgcctcatca
ggacgctccagtgccgtcagctcctcagacggatctttcttcacagacgccgactttgcc
caggccgtggcggctgctgcggagtacgcaggcctcaaggtggccaagtaccccaacccc
acgcaaggccaggagggaggccccggagcgcgaaagtaccaaatgaccccctcaggccac
cgtccgggcagccccccttccacagacagtaacatgagcacggccaacatgcataagagg
cctcctaagaagcagaaacagcaccctgcagcgggccacccagggctccagagacgagag
gtctacgctgaagatctgcctcctcctcccatcccccctccagcggggctcaagtccccc
acacatccctccaagacagccctggaggcccgggggatgatgtctcccaaggcaggcgag
ggcagggacaggagaggggactcaggaggagggtaccggccacgggagggatcggacccc
cgtaccagctcctctgagcgccgggagacccaggacagacagaagatcccccgtgcaggg
aaagggaacaaacaggaggggggcagcaccaaggcacgccaacacccaggaccagaggac
atcctgccctacagccgcccctccttccccacggtccacagtcccagagacagggacccc
agctcctccagctctatgtcctcccggggctcagggggccggcggagaggagaggggggg
ccgggggcccgcaggaaccccaacgacatgggggccttccagccaggagacgatgactta
gagatggtggagacctga
DBGET
integrated database retrieval system
