Oncorhynchus nerka (sockeye salmon): 115137781
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Entry
115137781 CDS
T07952
Name
(RefSeq) FRAS1-related extracellular matrix protein 2-like
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115137781
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
one04091
]
115137781
Lectins [BR:
one04091
]
C-Type lectins
Lecticans
115137781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
Motif
Other DBs
NCBI-GeneID:
115137781
NCBI-ProteinID:
XP_029529956
LinkDB
All DBs
Position
LG11:complement(13673687..13772481)
Genome browser
AA seq
2378 aa
AA seq
DB search
MAWIIPPLLQRQGTGTGAVVLLSALIAVIVTEDSAAQVFDSYGLSYALRSELSEDAILVA
NNGIRVPFGRAVFIDPINDLVIQVQPGDRCSITVLDNDPLSQRPGQLSPKKFPCEFGPND
VKYSHFGSRSPPLDRVRLQLRYDTHTDTIIIPFMMEVEVIFTQLEVLTRNMPLTVDKLLG
TSNPIDSKILEFTYDRSEHQCKITSLSSGSALPRYGKLVDEGKLGKMLDCDKFIKMNTRY
QHTFAHKSPNRDYFPMIVELQDKEGNLLKQEFFQVMVRIKDGEENTAPKPSFVAMMMMEV
DQFVMTAITPDMLAAEDIESNPDNLIFNITSPLSFEEGYIVSTDDRNLPITSFYQGDLKE
LKIAYKPPSVDSETERIFQIEFEVVDTEGAVSDPFAFMIVVKPMNTLAPVVTRNTGQLLY
EGQSRPLSSSHNLEVSDEDNLDNVRITVVDGLRHGQLTVLGSRRKFFAPADLDGGVVIYQ
HDGSDTYSDNIIFRMTDGKHEVEFLFPLTIVPTDDEPPIINANTGLILFKNQMMLISPLT
LSAADIDSEDSTIRFTIEAPFSPIGEVLLRQSEAPEDPSTWKFNAEDELYEKEVTEWLQQ
DITDGKLFYRHTGPHSTDTVMDQFVFRVQDDNDPPNQSEQSSFIIKILPVDDIPPELYPG
TTLQMTVHEYQLTYFRKKFLRYTDLDSEDRDLKYTITQPPTDTDENSPVVLGTIVLTESP
DTVVTEFTQAQVNHHKISYNPPDLELGITAHVLQVQYTVEDTSGNTVIGTFSIFLQPVDN
KPPQITNTGFTIFERGTHKITRAELHTVDLDTDSSQISFTLTQPPQHGTVQYTFTDLTKG
DAFNLLDIANDRISYIHNGDESTSDFFQLDVSDGVHVVTITIRVTVKPIDDETPTISLPA
GTIGSYIDVLENGATEITTKVIQGRDEDTDDLRLTFILEDPPVFGEILVNGVQSGSFTQA
DVINGLVVYAHTSGEIGLNTKYDYFNLTLTDMSDEWTVGGNRVTGVRVQITILPMDSQAP
EVFVGPQFTVVEGEKNVIEIFHISADDIDTPNDDLLCTIIVQPTSGYVENISPAPGSEKS
RSGTAISAFTIKDIRQNHIYYVQSIHKRVEPVEDRFTFRCSDGINFSERHFFPIAIIPSN
DEKPEIYMREFVVMEGMNIVIDTPILNGADVDIPSDELTFIITKPPKHGFILNQLTTGTV
TVTNFTLDQIREASSIVYEHDDSETKEDSFDLILTDGKYTVEKTIIVMIIPIDDETPRMA
INDGLEIEIGDVKVIDNNVLKATDLDSEDSTLTYVVRYGPGQGLLQRRTPYGTLENITVG
MNFTQYQVDQALIIFIHNGQEGIRDLIKFDVTDGINPLIDRYFYVTVGGIDVVFPDVVSK
GVSLKEGGRVTLTTDLLSTSDLNSPDEHLVFTITRAPQRGHLECTDGPGMPISSFTQLQL
AGSKVYYIHTADDEVKMDSFEFEVTDGYNPVFRTFRVSITDVDNKKPVLTVHSLVVNEGE
NKLITPFELTAEDRDTADPLLKFTVTQVPVHGRLLFNSTRPVTSFTKQDLNENLISYKHD
GTESSKDSFSFTVTDGTHTDFYVFPDTVFETRRPQMMKITVLSVDNGVPQIVVNKGGPTL
RVLETGHLGFLITSKTLKAEDRDSPQLSVTFKITVGPEHGYLINLGTGNATVTTFTQAEV
DDMKICYVLRDGHNATSDIFFFSIEDNGGNRLKNQVFRLNWAWVSLEKEYYVLDEEAKYL
EVVLKRRGYLGETSFVSISTRDGTAEKDKDFRGKAQKQVQFNPGQTTATWRVRILQDGVY
EQSETFQIVLSEPVMAALEFPDTATVEILDPADESTVFIQSAVYSIEEDIGELLIPVRRS
GDVTQELMVICYTQQATATGTIPSTVLSYSDYISRPEEHNSVLRFDKGETESSCRVVIID
DSLYEEEESFNVTLSMPMGGRLRQEYHTARVTIIPDLDDAPVFYFGGTDYRVDESDGYVE
VKVYRTGTDLSKTATVTVRSRKTDPVSAEAGVDYVGISRNLDFAPGVSQQTFRVTILDDL
GQPVLEGTETFELILRMPMNGILGEPGKATILINDSVSDLPKVQFHDAMYMGHENSGQIS
VVVYRSGDISYRSTVRCYTRQGTAQVMMDFNERPNTDASIITFLPGEVEKPCVLSLVDDT
EHEEEEELRLVLGSPRSESPFGASIGKQNETLVKIKDEADKAIIKFGETKFSVSEPSGAG
QVSMVKIPVLRVGDTSKVSVVRVHTKDGSATSGEDYHPVSEDIEFKEGDTEHYIEVEILF
DGVREMREAFTVHLTYGEQMSKAIIYIEETNIWRTSPSTLRAPGVLPMQPGSEVGGAVCS
RAGNSTERGPELSSSIVSISIEDACSPWWSPPRPLSNF
NT seq
7137 nt
NT seq
+upstream
nt +downstream
nt
atggcttggattattcctccgctattgcaacgccaagggactggtactggcgctgttgtt
ttgctctctgctttgatcgcggtgattgtgacagaggactccgctgcgcaggttttcgac
agttatggattatcgtacgcgttgagatcggagctgtcagaggatgctatattggtggcc
aacaatggaatacgcgtgcctttcgggagagcagtgttcattgatcctatcaatgatctg
gtaattcaagtacaaccgggagacagatgtagtataacggttctggataacgacccgctc
tcccaaaggccagggcagctctctcccaaaaagtttccctgtgaatttggtcccaatgac
gtaaagtattctcacttcgggtccaggagccccccgctggatagggtgaggctgcagctc
agatatgacactcataccgacaccataatcatcccgtttatgatggaagtggaggtgatt
ttcacacagttggaagtgttaaccagaaacatgcctctgactgttgacaaactgcttggc
actagtaaccccattgacagtaagattctggagttcacctacgatagaagtgaacatcag
tgtaaaataacgtctctctccagtggcagtgcattacccaggtatggaaaacttgtggat
gagggaaaacttggaaaaatgctggactgtgacaaatttattaaaatgaatacccgctat
cagcacacttttgcacacaaatcacccaatagagattatttcccaatgattgtggaatta
caagataaagagggtaatctgctgaagcaggagtttttccaggtgatggtgcgtataaag
gatggagaggagaacacggctcctaaacccagcttcgtggccatgatgatgatggaggtg
gatcagtttgtgatgacagccatcacccctgacatgctggctgctgaggacattgagtct
aaccctgacaaccttatcttcaacatcacctcccccctctccttcgaggaggggtacata
gtcagtacagatgaccggaacctgcccatcacctctttctaccagggagacctcaaagaa
ctaaagatagcctacaagcctccgtctgtggactctgagacagaacgtatcttccagata
gagtttgaggtggtggacactgagggggctgtgtctgatccattcgccttcatgattgta
gtgaaacctatgaacacgcttgctccagtagtcaccaggaatacgggtcagcttctctac
gagggtcagtccagaccactgtccagctctcacaacctagaagtcagtgacgaggacaac
ctggataatgtcaggatcacggtggtcgacgggctgcggcatggccagctgacagtgctc
gggtcacgcaggaagttctttgccccagctgatctggacgggggcgtggtcatctaccag
cacgacggcagcgacacgtacagcgacaacattatcttccggatgacggatgggaagcac
gaggtggagttcctgtttcccctgacaatcgttcccacggatgatgagccgcccattatc
aatgccaacacggggttaatcctcttcaagaaccagatgatgctcatttcgccactcaca
ctcagtgccgcagacatcgactctgaggactccactatcaggttcaccatagaggcaccg
ttctcgcctataggggaggtgctgctgaggcagtcagaggccccagaggacccctccacc
tggaaattcaacgctgaggatgagctgtatgagaaagaggttacagagtggctgcagcag
gatatcacagatgggaaactgttctacagacacacagggcctcacagcactgacacagtc
atggaccagtttgtattccgggtccaggatgataatgacccccctaaccaatcagaacag
agctcgttcatcatcaagattctgcctgtggatgacatcccccctgagctgtatcctggt
accaccctccagatgaccgtacacgagtaccagctcacctacttccggaagaagtttctc
cgctacactgacctggactcggaggacagagatctgaagtacaccatcacccagcccccg
acagacacagacgagaacagccctgtggtactgggcactattgtgttaacagagagtcca
gacactgtagtgactgagtttactcaagctcaggtcaaccaccataagatatcatacaac
ccacctgacctggagctggggatcacagcccacgttctgcaggtccagtacacggtggag
gatacgtcagggaatactgtcatcggaacgttctctatattcctgcagcctgtcgacaac
aagccgcctcagataaccaacaccggcttcactatattcgagcggggaacacacaaaatc
accagagctgagctgcatactgtggatttagacacggacagtagccagatctccttcact
ctaactcagccccctcaacacggcacggtccagtataccttcaccgacctgaccaaagga
gacgctttcaacctgttggacatcgctaacgacaggatctcctacatccacaacggagac
gagtccaccagcgacttcttccagctggatgtcagtgacggcgtccatgttgtgaccatc
accatcagggttaccgtgaagcccattgatgacgagaccccgaccatcagcctgccggcc
ggaaccatcggctcctacattgacgtcctggagaacggagccactgagatcacgactaaa
gtcatccaggggcgggacgaggacacagacgacctccgtttgaccttcatcctggaggac
ccaccggttttcggggagattctggtgaacggggtccaatcgggaagcttcacccaggct
gacgtcatcaacggactggtggtgtacgcccacaccagtggagagatcggcctcaacact
aaatacgactactttaatctgacgctgacagacatgtctgatgagtggacggtagggggc
aacagggtcacgggggtcagggttcagatcaccatcctccccatggacagccaggctcca
gaggtgtttgtaggcccacagttcactgtcgtagagggagagaagaatgtgatagagatt
tttcacattagcgctgatgatattgacactcctaatgatgacctgctttgtaccatcatc
gtccagcccacgtcaggctacgtggagaacatctccccggccccaggctcagagaagtcc
aggtctgggactgcgatcagtgcattcaccatcaaggacatcagacaaaaccacatctac
tacgtccaaagcatccataaaagagtggagccggtagaggacaggttcacgttcagatgc
tctgacggcattaacttctccgagagacatttcttccccatcgctatcatcccgtccaac
gatgagaagccagagatctatatgagggagtttgtcgtcatggaagggatgaatattgtc
atcgatacgcccatcctgaacggagccgacgtggacatcccctcggacgaactcactttc
atcatcaccaaaccacccaagcacggcttcatcctcaaccagctgacaaccggcaccgtc
acagtcaccaacttcaccctggaccagatcagggaagcctccagtatagtgtacgaacac
gacgactctgagaccaaggaggacagctttgacttaatcctgacggacggtaaatatacc
gtggagaagaccatcattgttatgatcatccctatagatgacgagacacccaggatggcc
atcaacgacggtttggaaatagagataggagacgttaaagtgatcgataacaatgtttta
aaagccaccgacctggactctgaggatagtactctgacgtacgttgttcgctacgggccg
ggccaggggttgttacagaggagaaccccttacgggacgttagagaacatcacagtgggg
atgaacttcacccagtaccaggtggaccaggctctcatcatctttatccacaacgggcag
gaaggaatccgggaccttatcaagtttgacgtgacggacgggatcaaccctctgatcgac
aggtacttctacgtgacggtgggcggcatcgacgtggtgttccctgacgtggtcagtaag
ggggtctctctgaaagaaggcggtagagtaacgttgaccacagacctgctcagcaccagt
gacctcaacagtcccgacgaacacctggtgttcaccatcaccagagccccacagagaggc
catctggagtgtactgacggccctggtatgcccatctcctcctttacccagctccagcta
gctgggagcaaggtgtactacatccacacggccgatgatgaggtgaagatggacagcttt
gagttcgaggtcaccgacggttacaaccctgtgttccgcacgttccgtgtctccatcacc
gacgtggacaataagaaaccggttctaacggttcacagcctggtggttaacgagggagag
aacaaactcatcacacccttcgagctgaccgcagaggaccgcgacacggctgaccccctc
ctgaagttcacggtcacccaggtccctgtccacggtcgcctcctcttcaacagcacccgc
cccgtcacctccttcaccaaacaggacctgaacgagaacctcatcagctacaaacacgac
ggtactgagtcctccaaggattccttctcctttaccgtgactgacgggacgcacaccgac
ttctacgtgttcccagacaccgtgttcgagacgcggcgcccccagatgatgaagatcacg
gtcctgtcggtggataacggggttccccagatcgtggtgaataaaggagggcccaccctg
agggtgttagagacgggtcacctggggttcctcatcacctctaagactcttaaggccgag
gacagggatagtcctcagctatctgtcacctttaagatcaccgtgggaccagaacatgga
tacctcatcaacctgggtacaggcaacgctaccgtcaccacattcactcaagctgaagtt
gatgacatgaagatttgctacgtgctaagagatggtcacaatgctacgagcgacatcttc
tttttctccattgaggacaatggaggcaacaggctgaagaaccaggtgttcaggctgaac
tgggcctgggtctccctggagaaggagtactatgtgttggacgaggaggccaagtacctg
gaggtggtcctcaaacgacgaggatacctgggagagacatccttcgtcagcatcagcacc
agagatggtacggcggagaaggataaggacttccgtggtaaagcccagaagcaggtccag
tttaatccaggtcagaccacggccacatggagggtgaggatcttgcaggatggtgtgtac
gagcagtctgagaccttccagattgttctgtcagaacctgtcatggctgccctggagttc
cctgacacagccactgtggagatcctcgacccagctgatgagtcgacagtgtttatccag
tctgcagtctactctatagaggaggacatcggggagctgctgatcccagtgcgcaggagt
ggtgacgtcacacaggaactcatggtcatctgctacacacagcaagccacagctacaggg
accatcccctctacagtcctgtcctactctgactacatatccagacctgaggaacacaac
agtgtcctgcgcttcgataagggcgagacggagagttcctgtcgtgtggtgatcatagat
gactctctgtatgaagaggaggagagcttcaacgttaccctcagtatgcccatgggaggc
cgtctgagacaggagtaccacactgccagggtcaccatcatacctgacctggacgacgct
ccagtattctacttcggaggcacagactaccgtgtggatgagagtgatggttatgtggag
gtcaaggtgtataggacaggcactgacctctctaaaacagccacggtcactgtacgctcc
aggaaaacagaccctgtctctgctgaagccggtgtggactacgtcggtatcagcaggaac
ctggacttcgccccgggggtcagccagcagacattcagggttaccatcctggatgacctg
ggtcagccggtgctggaggggaccgagacattcgagctgatcctccgcatgcccatgaac
ggcatcctgggagaaccggggaaagccaccatcctcataaacgactccgtctctgacctg
cccaaggtgcagttccatgatgccatgtacatggggcatgagaactccggccagatctca
gtcgtggtgtatcgtagtggagacatcagttacaggtcaacggtccgctgttacaccaga
cagggaaccgctcaggtcatgatggacttcaacgaacgacccaacacagacgcttccatc
atcaccttcctaccaggggaggtggagaagccgtgtgttctgtccttggttgatgacacg
gagcatgaggaggaggaggagctgaggctggtgttggggtcaccccgcagtgagtctccg
ttcggagcgtccatcgggaaacagaatgagactctggtcaagatcaaggacgaggcagac
aaggccatcatcaagtttggggagactaagttcagtgtgagtgagcctagcggggcaggc
caggtgtccatggtgaagatcccagtgctgagggtaggagacacctccaaggtctctgtg
gtccgcgtccacaccaaggacggatcagccacctccggagaggactaccatcctgtatct
gaagacattgagttcaaggagggtgacacagagcactacatcgaggtggagatcttgttt
gatggagtcagagagatgagagaagccttcactgtccacctaacctatggagaacagatg
agtaaggccattatctacatagaggagaccaacatctggcggacgtcaccttccaccctc
cgtgccccaggtgttctccctatgcagcctggctccgaggttgggggggcagtgtgcagc
cgggctgggaactctacggaacgagggcctgaactcagcagctccatagtctccatcagt
atagaggatgcatgctccccctggtggtctccaccccgtcctctgtctaacttttga
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integrated database retrieval system
