Oncorhynchus nerka (sockeye salmon): 115137883
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Entry
115137883 CDS
T07952
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1-like isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115137883
Membrane trafficking [BR:
one04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
115137883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_1
TPR_2
TPR_8
TPR_7
TPR_NPHP3
SH3_1
TPR_10
SH3_9
TPR_14
Motif
Other DBs
NCBI-GeneID:
115137883
NCBI-ProteinID:
XP_029530020
LinkDB
All DBs
Position
LG12:complement(1316698..1334605)
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AA seq
1374 aa
AA seq
DB search
MKKLITSTAEQEVEPVAVVNRMDTSTRHYRRELSAEDHNHDPVKKGTRSRKMERSSSRGA
GTSEDGFPTALPMLLAMVEGPDKLPADEGSQEVLRGKLRLLEADSIEVNALFMELSARLV
SINCEENAIFVTFKTFEEIWRFTTYYTMGFLGQCMENLLLDQDFWLSSLDQEYFAIEISI
QEETLNLMYKGILMQEGSLFASCSSTQMFDSSTSGRDLYLEQGDIALFEPPFLGSGWTVL
SLGDGARGTKPKPAMEPVIPFHQWFLKSCAENILVGSGKPACDFPCQFATGSCVATVEYD
AGGPDELSMEQGDRIIIVGLLVSCFEWFTGRLERTGEVGLVMTTLVRPADSLCEASDIFL
EKEERLFFNLKEDQIKEETIALLKKINQNDVGHVYKLDLIAQPDSPNEPTQSRDGSQGNM
DAHQQAELRRKIEEILLNGKMKSKVPHATVTTNGTLEDQSETSKTTLPSGPHFTIQPVEE
GTTTNQEKFLPLLSFLGGSNYKPEFGALYGQTPERLLATFTGHSDDVDKLVAYLGVARET
ARKMRLHWSQSRLCFLLGKLCAGRSKFSQARVYFEEALSIPRDIFTDMLMLASIYANLAV
IYLMQKNTEKYLALSERIAALLMGIPYCVSTVEKDSEVLKFILKKAVLSHNKMAEARACF
LLAKLHWRRGEAADTIPFLERLLVLLAEPPGVRSVVPSHGYLSLAGLYSQLSLPHLCVSS
ARRATMHPSARLADCLNGMGLVLENSDRLYGIRKQDVAIPAQVAPYLSQSLSFTGRLDGV
GGTGDHTLSQALTLCLSQLFQEHGMLGHAVRSMHTLIDHHCAPSSSSGTSSIPERNIALV
WLAWLHICNSQPEVSLDVLDSVLASMPEHCTTPQEGLVHNMRGVALRSMGNLRRAAESYQ
TAIDVCEECEDLANWAVAEANLGLLCLKAGAKRLAEQHLTEAVEMLSALEGQEHEVNFTT
VLLELGQYYVNQRHLDRGKIYYEWALLMAIKSNHSDSQLSVTRRLCHLYRTVCPDEAQCI
IYNEHQLALLVTRGDRRQEGEVLETISQLYLSLGTERARRSALDYTKRSLGIFIDLGRRE
KEAYAWLQAGKIYHLLGQTELVDLYLQVAQDVGVSTGDTHFILQLLEAAGDVFFNSSTER
EKAVCFYGDRALPIAVKTSSTEVRLRLSNKLVELLLQMKLYGEAVEYAQTALDISVKLGN
RLNERVAFHRLATLYHCLGQFELAEHYYLKALSLCPTPLEFDEETLYYVRVYRTLGDIIF
YDLKDPYDAAGYYHLALAAAMDIGNKKSQLQLCTRLATIYHNFLVDRELSLFFYQKARAF
ASDLNVRRINLSPDQIFSSMSQYKTNRVNIQEPRNKSPPNGHLGLKLVRRGERL
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagttaattacgtcaacagcggaacaagaggtggaacccgtggcggtggttaac
cgtatggacactagcactcgccattaccggagagagctctcagcagaagaccacaaccat
gatccggtaaaaaaggggaccagaagtagaaaaatggagcgctccagctccagaggagca
ggcacatccgaagacggcttcccaacagcgctgcccatgctgttggccatggtggagggg
ccggacaagcttcctgcagacgaggggtcacaggaagtgctgagggggaaactccgcctc
ctggaggccgacagcatagaggtcaacgctctcttcatggaactatcagctcggcttgtt
tccatcaactgtgaagaaaacgccatatttgtcacattcaaaacatttgaagagatatgg
aggttcaccacgtattacacaatgggctttctgggtcagtgcatggagaacctgctgttg
gaccaggacttctggttgagttctctggaccaggagtactttgccatagagatctctatc
caagaggagactctcaacctcatgtacaaaggcatcctcatgcaagagggttccttgttc
gccagctgcagctccacccagatgttcgacagctccacctctggtagagacctctacctg
gagcagggggacatcgccctgtttgagcccccgttcctgggctcggggtggaccgtactc
tccctgggggatggagcccgggggaccaaacccaaaccagccatggagcccgtcatcccc
ttccaccaatggttcctcaaatcatgtgcggagaacatcttagttggcagtggaaagcca
gcatgtgatttcccctgccagtttgccactggctcttgcgtggccactgttgagtatgac
gccggtgggccagacgagctaagcatggagcagggcgaccgcatcatcattgtgggcctg
ttggtgtcgtgcttcgagtggttcactggcagactggagagaacaggagaagtgggattg
gtgatgacaacactggtcagaccggccgatagcctttgtgaggcgtctgacattttccta
gagaaagaagagaggttgtttttcaacctgaaagaagatcagattaaagaggagacaatc
gccttactgaaaaaaatcaaccagaatgatgttggacacgtctacaaacttgatctgatt
gctcaaccggattctccaaatgaaccaactcaaagtagggatggttcccaaggcaacatg
gacgctcaccaacaagcagaactgaggaggaagattgaagagattctgctaaacgggaag
atgaaatcgaaggtgcctcatgcaactgtgacgacaaatggaactctggaggaccagagt
gagacctctaagactacattacccagcgggcctcacttcaccatccaaccagttgaggaa
ggcaccaccaccaaccaggagaaattccttcctcttctatccttcctgggtggcagcaac
tacaagccagagtttggcgccctctatggccaaactccggaacggctcctcgccactttc
actggccactcggacgacgttgacaaattagtggcgtatctaggtgttgccagggaaact
gccaggaagatgcgtctccattggtcccagagccgcctctgtttccttttggggaaactc
tgcgcaggacgatcaaaattttcccaggctcgcgtctacttcgaggaggcccttagcatc
cctcgagacatcttcacggacatgctaatgctagctagcatttacgctaacctagcggtg
atctatctcatgcagaaaaatacagagaaatacttggctctgtcggagcggatcgctgcg
ctgctaatgggcatcccttactgcgtctcgacagtggagaaagactcagaagttctaaaa
tttatcctgaagaaggcggtgcttagtcacaataaaatggcagaagccagagcatgcttc
cttttggccaagctccactggaggcgaggagaggcggcggacaccattcccttcctggag
aggcttctggttctcttggcggagccccctggtgtccggagcgtcgtgcccagccatggc
tacctcagcctggcggggctgtacagccagctctccctccctcacctctgtgtcagctcg
gccaggagagccacgatgcatccgtctgctaggctagccgattgtctgaatggaatgggg
ctggttctggagaactcagacagactctatgggatccggaagcaggacgtcgccattccg
gctcaagtggctccatatctcagccagtcgctctccttcactgggcgattagatggagtc
ggtggcactggtgaccacactctaagccaggctctaacactctgcctatcccagctgttt
caggaacatgggatgctaggtcacgccgtacgctccatgcacactctcatagaccatcat
tgtgcgccatcatcatcatcgggcacctctagcattcctgaacgaaacatcgcccttgtg
tggctagcatggctccacatctgtaacagccaaccagaggtttctctagacgtcctcgac
tcagtgctggcctccatgccagaacattgcactaccccacaggaaggactggtccacaac
atgaggggtgtagccttgcgaagcatggggaacctgaggagggcagcagagagctaccag
acggccattgatgtgtgtgaggagtgtgaggacctggctaactgggcagtagcagaagct
aacctggggttattgtgtctgaaggctggggctaagaggttagcggagcagcatctaaca
gaagctgttgagatgttgtcagcgctggagggacaagaacatgaggtgaactttaccacc
gtgctgttggagctgggacagtactatgtgaaccagagacacctggacagaggaaagatc
tactatgaatgggctctactcatggctatcaagtcaaaccactcagacagtcagttgagc
gtgacgcgacgcttgtgccacctttacagaacagtgtgtccggatgaggcccagtgcatc
atctacaacgaacatcagctggccctgctggtgacccggggagacaggagacaggaggga
gaggtgttggagaccatcagccagctataccttagtctggggacagagagggctaggcgg
tctgctctggactacactaagcgtagcctggggatcttcatagacctgggccggagggag
aaggaggcttacgcctggttacaggctgggaagatataccacctgctgggccagactgaa
ctggtggacctttatttacaggtggcccaagatgtgggggtgagtacgggagacacacac
ttcatcctacagctgctggaggcagcaggggacgtcttcttcaacagctcaacggagaga
gagaaggctgtctgcttctatggggaccgtgccctgcccatcgcggtgaaaaccagcagt
acagaggtcagactgagactgtctaacaagctggtggagctgctgctgcagatgaagctg
tatggagaggctgttgagtacgcccagaccgccctggacatcagtgttaaactgggaaac
cgtctgaacgagcgtgtggcgttccaccgcctggctactctgtaccactgtctgggtcag
tttgagctggctgaacactactacctgaaggccctctccctctgccccacgcccctggag
tttgatgaggaaaccctgtactatgtcagggtgtatcggacgctgggggacattatattc
tatgacctgaaggacccgtatgacgccgcagggtactaccacctagcacttgctgcagcc
atggacatcggcaacaagaagtcccagctccagctctgcacccgattggctaccatctac
cacaacttcctggtcgatcgggaactgtccctcttcttctaccagaaagcacgagcgttc
gcctccgacctcaatgtacgacgcatcaacctctcaccagaccagatcttcagcagtatg
tcacagtacaagacgaacagggtgaacatccaggaaccaagaaataagtcaccgccaaac
ggccatcttggtttgaagttagtgagaagaggggagaggttatag
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