Oncorhynchus nerka (sockeye salmon): 115137976
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Entry
115137976 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115137976
09122 Translation
03013 Nucleocytoplasmic transport
115137976
03015 mRNA surveillance pathway
115137976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115137976
03041 Spliceosome [BR:
one03041
]
115137976
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115137976
Spliceosome [BR:
one03041
]
Complex C
Other components
EJC/TREX
115137976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
115137976
NCBI-ProteinID:
XP_029530197
LinkDB
All DBs
Position
LG12:3958337..3990668
Genome browser
AA seq
1442 aa
AA seq
DB search
MADEDVTLDGKSLQSLRVADLKAALEHRHLPKSGAKNALIKRLKGALMLENVKKTSTSHI
GLQPNSQIGEEMSQNSFIKQYLAQQQDLLRQRLEREAREAAEADGETGPEEEEDEEDEEE
EDTEQDNNSASYHPDKHCPIPSQPPLNRAEEGGGGGTMMMGQGMMSQGMGKGTMSRRPHF
GPGSVPQESPDAPGSWTQQRLSLHTGLRHEELTTPSPPRAVASLSVRVLGDPERQGLPPS
MPPRVQAQENEGTAPAADDRPAHYVLHLSRSARAAASAGGNRVQEDSDDDDSSEEDEDEW
GPAAGARRGGGGRGRSPPPRPQQPSPSIPVGRERSRRKLQPPQHIPPQQVVHQPPMQLRQ
PTPPPSPPPELSFPLPDTPKQSPPDMDEEPEGAGAGVAIRSPPGGLQRQDSDSSSRSSSP
EPLAQRRPGPLSLLARKMASEGAFGKRGEGASDGQTGPGGESSGSGDGGSIVPGAGPGVG
VVLFPGAAITHIGGSSAAHSGTVPVPEVPAPVSMFGSGAQFHPLSLVSGAAVPGITLTAE
PQGTSGETAQKRTEKQVESESCLPPWKHGRDVTSVSLPFGSGESEVPAVHQGDSPKKSPF
GRDEPLSSPPGSTTCLPALAPKKPRMFSDTSSGSMASPPKPGQQGSVVVTTPGEPPLKQE
VLVSGAQQDTDNTIEVTSPNKASAEKPGGKTGGEIVKMEKESDSQAEKATPKAAGETRRR
GPEEAVEVEPMGPALPPSYPGKGEEEKKRKEDVRKKEEERCRQRKRASDRRSSPSSGGDS
SSSDSDSGSSSSHSSASTASRDKKKKSVPGKGRGDERRRLEKGGEKKQPSREKKQSSLSE
PSGPGPMEVERPDPEDSRAPQPTPEGDPENSEGRMEESTTPKALASRNISLTTGSKTSPE
GAGEAESGTAAGRKRRWGSCTAVTTKKPSISITTDSLKSLIPDIKTSQEAVMDLHPDDSQ
LSGDEDTSTTREDQGLDKDLKIRRTVTQVVPGESHENGQGEREEEEEEEEENKRERERTH
KEKAKEQLLRRWHGVRMSTTPRTPSQPXSMDMETVTPSDTLVRRSISQQKSGVSVTIDDP
VRTDKLPSPPRGKVSNIVHVCNLVRPFTLGQLKELLNRTGSVVEEGFWIDKIKSHCYVTY
SSTEEAVATRAALHRVKWPQSNPKVLSVDFCEQNELDFHRGLLTVDPREEHRPQPAVGPG
GPKVRPGGLPPLMPERDGRGAVGGVRDQWAEREREMERRERTRAEREWDRDKVRDFGGKP
GEERERGRRSRSLDRERRRKEREGKEKKTDKKAVPTDEPPVKLLDDLFNKTKAAPCIYWL
PLTEEQANQRGKEREERQKERERRRKEQQEEEDKKREEEKKERMKSREEGGAAVSTGVGS
VRGSEGDRDREGERGRDREGERGRDGDKRKDIGGFKPKGPDIKPLSGFRHSRSRSNLRDR
RR
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagatgttacgctggatggtaaatctctacaatcgctccgtgtggcggat
ttgaaagccgctttggagcatcgacacctccctaaaagcggggcaaaaaatgcgctcatt
aagcgactgaagggggctctgatgttggaaaatgttaagaagacttccacttcccacatt
gggctccagcccaactcccagattggggaggagatgagccagaacagcttcataaagcag
tacctggctcagcagcaggacctccttcgccagaggctggagagagaggcccgggaggcg
gcagaggccgatggggaaacaggcccagaggaggaggaggatgaggaggatgaggaggag
gaggacacagagcaggacaacaacagtgcttcctaccatcctgacaagcattgccccata
ccctctcagcccccactgaaccgggccgaggaaggaggtggaggagggacaatgatgatg
gggcaaggaatgatgtcccagggtatgggcaaagggacgatgtctcgcagaccacacttt
ggcccaggctccgtgccccaggagtcccctgacgcccctggctcctggacgcagcagcgt
ctctcactccacactggcctccgccacgaggagctcaccaccccctcaccaccccgcgct
gtggcctccctgtctgtgcgtgtcttgggggaccccgagcgccagggcctgccaccctcc
atgcccccccgcgtccaggcccaggagaatgaaggcaccgccccggcggctgacgaccgc
cccgcccactatgtgctccacctcagccgctccgctcgggcagcagccagcgccgggggt
aaccgcgtccaggaagacagtgatgatgatgacagcagtgaggaggacgaagatgagtgg
ggacctgcggcaggggcaagaagaggtggcggtggaagaggacgttcccctccccctcgg
ccccagcagccttcccccagcatcccagtgggccgagagaggtccagacgcaagctccag
cctccgcaacacatcccccctcagcaggtagtacaccagccccccatgcagctccgccag
cccaccccgcccccctccccacccccagagctctcctttcctctacccgacacccccaag
cagagcccgcccgacatggatgaggagccagaaggagcaggggctggggtagccatccgc
tcccctccaggtggcctccagaggcaggattctgactccagctcccgctccagcagccca
gagcccctggcccagcggcggcccggacccctctccctgctcgcccgcaagatggcttcc
gagggagcattcgggaagagaggtgagggtgcctcagacggccagacaggtcctggtggg
gagtcgtccggatcaggagatggcggtagcatcgtcccaggagcaggaccgggggttggg
gtagtcctgttccctggggctgctatcacccacatcggaggcagcagcgcagcgcactcc
ggaaccgtccctgtacccgaggtccctgcaccagtgtctatgtttggatcaggggcccag
ttccatcctctctctctggtgtctggagcagctgtcccaggcatcaccctcactgcagag
ccccagggtacatctggagagactgcacagaagagaacggagaaacaggtagagagtgag
agttgcctgccgccatggaagcacggacgggatgtgacgtctgtgtccttgccgtttggg
tctggggagtcagaggtgcctgcggtgcaccagggggacagcccgaagaagtcacccttc
ggcagggacgaacccctctcctctcctcccggctcaaccacctgtctgcctgctctcgcc
cccaagaagccccgcatgttctccgacacctcatccggctccatggcatcccctcccaaa
cctgggcaacaggggtctgtggtggtgaccacgccaggggaaccccccctcaaacaggaa
gtcctcgtctcaggggcccagcaggacacagacaacaccatagaggtcacctcaccgaac
aaggcgtccgcggaaaagcctggagggaaaactggaggagaaattgtaaagatggagaag
gagagtgacagccaggcagaaaaggcgacaccgaaagccgccggcgagaccaggagaaga
ggacctgaagaggctgttgaggttgagcccatggggcctgctctgcccccctcttaccca
ggtaagggagaagaagagaagaagcggaaggaagatgtgaggaagaaggaagaagagcgg
tgcaggcagaggaagagggcgagcgacaggaggtcgtcgccctccagcggtggcgactct
tcatcctccgactcggattctggatcctcttcatcacattcctctgcctccaccgcctcc
cgggacaaaaaaaagaaatctgtcccgggaaaaggaagaggggatgaaaggagaagactg
gaaaaaggaggagagaagaaacagccttccagggagaagaagcagtcttccctgtcggag
ccgtccggccctggccctatggaggtggaaaggccagacccagaggactccagggccccc
cagcccacccccgaaggggacccagagaacagtgagggccgcatggaggagagcaccact
cctaaagctttggcctcacgcaacatctctttaaccacaggcagtaagacgtctccagag
ggagcaggagaggcagagtctgggaccgccgcggggaggaagaggaggtggggatcctgc
acggccgtcaccaccaagaaaccctccatcagcatcaccacagactctctaaagtctctg
atcccagacatcaagaccagtcaggaggctgtgatggatctccacccagacgacagccag
ctgtctggggacgaggacacctccaccaccagggaggaccagggcctggacaaagacctt
aagatcagacgcaccgtcacacaggtggtcccaggtgaaagccatgagaatggccagggg
gaacgagaggaggaagaggaggaagaggaggagaataaacgggagcgtgagaggacacac
aaagagaaagcgaaagaacagctactcagaagatggcatggtgtaaggatgagtacaacc
ccaagaacaccatcccaaccgtgaagcatggacatggaaacagtcactcccagtgatact
ctggtgcgtcgctccatcagtcagcagaagtctggtgtgtctgttaccatcgacgatcca
gtccgcacagacaaactgccctctccgcccagaggcaaagtctccaacatcgtccacgtc
tgtaacctggtgcgacctttcaccctgggccagctgaaggagctgctgaataggacaggc
tctgtggtggaggagggcttttggatcgacaagatcaaatctcactgctacgtcacttac
tccagcacagaggaggctgtggccacacgagctgctttgcacagggtgaagtggccccag
agcaaccctaaggtcctcagtgtggacttctgtgagcagaacgagctggactttcacaga
ggtctgctgaccgtggaccccagagaggagcaccggccccagcctgccgtgggtcctgga
ggtcccaaagtccgaccgggggggctgccccctctgatgcctgaacgggacgggcgcggg
gctgtcggaggggtgcgggaccagtgggcggagagagagagggagatggaacgccgggag
aggaccagggcggaacgcgagtgggaccgggacaaggtgcgagacttcggaggcaaacca
ggagaggagagggagagagggaggagatctcgctccctggatagagagaggaggcgaaag
gagagggaagggaaggagaagaagaccgacaaaaaggctgttccaacagatgaacctcct
gtcaaactactagacgacctcttcaataagactaaagcagctccctgtatatactggctt
cccctcactgaggaacaggcaaaccagagggggaaggaacgggaagagcgacagaaagaa
cgagagaggaggcggaaagaacagcaggaggaggaggacaagaagcgagaggaggagaag
aaggagagaatgaaaagtagagaggagggaggcgctgcggtcagcactggagttgggagt
gtccggggatctgagggagacagggacagagagggggagcgagggagggacagagagggg
gagcgagggagggacggggacaagaggaaggacattggtggtttcaaacccaaaggtccc
gatattaaacccttgtcggggttccgacactcccgtagccgtagcaacctccgagacaga
cgccgctga
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