Oncorhynchus nerka (sockeye salmon): 115138008
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Entry
115138008 CDS
T07952
Name
(RefSeq) fragile X mental retardation syndrome-related protein 1-like isoform X1
KO
K15516
fragile X mental retardation protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115138008
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115138008
Factors involved in mRNA localization
Other mRNA localization factors
115138008
mRNA cycle factors
Stress granule specific factors
115138008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
KH_9
Tudor_FRX1
FXR_C1
KH_1
Agenet
KH-I_KHDC4-BBP
DUF150_C
Tudor_2
Motif
Other DBs
NCBI-GeneID:
115138008
NCBI-ProteinID:
XP_029530253
LinkDB
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Position
LG12:complement(5596441..5628783)
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AA seq
682 aa
AA seq
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MDGLAVEVRGSNGAFYKGFIKDVHEDSLTIVFENNWQPERQLPFSDVRLPPPADYHKDIG
EGEEVEVYSRANEQEPCGWWLARVRMMKGEVSQGLFYVIEYAACDATYNEIVTHERIRPV
NPNSPSSRNSFHKVPIAVPEDLRDICANDNIHKDFRKAIGANCIFYSAASHELTVLSTNE
TSVKRAALLSDMHFRSIRTKLMLMSRNEEATKHLETSKQLASAYQEEVKVREDLMGLAIG
SHGANIQQARKVPGVTAIELEEESCTFRIYGETPEAVKLARVFLEFKEDYFQVPRNLVGK
VIGKNGKVIQEIVDKSGVVRVRIEGDNDKKLPREEVGRQGAGREDTAPKQEGMVPFVFVG
TKENISNAQALLEYHVAYLQEVEQLRLERLQIDEQLRQIGVGYRAPPSRVGGTGPGDREK
GYLTDESSNSTNLHSSRIYGGRGRGRRPSNSQYSGYGTNSEQSNASEPEDLNERDQRPRG
VGGDERGSRRGGRGRGSNTGRGRGGPASRPSNSISSVLKDPDSNPFSLLEGESEQGDTDA
SEGVGEVDLRRRSRRRRNDQEPSVMDAAATESDSQAGPNENGLDEQGRPQRRNRSRRRRN
RGNHPEGGSASCDRLPVEVTVADYISRAESQSRQTLPQETLAAPELKENGSSAKRDEHMA
PSKRSPSNGMATPSETLVNGVS
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggacgggctggcggtggaggttcgcggttcgaacggggccttctacaaggggttcatc
aaagatgtccatgaagactcactcacaatagtatttgaaaacaactggcaaccagagaga
cagctgcccttcagtgacgtgcggctgccgcctccagccgactaccacaaggacatcggc
gagggagaggaggttgaggtgtactccagggccaacgagcaggagccatgtggctggtgg
ctggcccgggtgagaatgatgaagggagaggtgagtcagggactgttctacgtcatcgag
tacgcagcctgcgacgccacatacaacgagatcgtcacgcacgaacgcatccggcccgtc
aaccccaacagcccctcctcccgaaactccttccacaaggtccccatcgctgtcccagaa
gacctccgggacatctgtgcaaacgacaacatccacaaagacttcaggaaagccattgga
gccaactgtatcttctacagtgcagcctcacacgagctcaccgtgctgtcaacgaacgag
acgtcagtaaagcgtgctgctctcctgagcgacatgcacttccgcagcatccgtaccaag
ctcatgctcatgtcccgcaacgaagaagccactaaacaccttgagaccagtaagcagctg
gcgtcagcataccaggaggaggtgaaggtaagggaagacctgatgggtctggccattggc
tcccacggtgccaacatccagcaggccaggaaggtgcccggcgtcaccgccatcgaactg
gaggaggagagctgcaccttcaggatctacggagagactccagaagcagtgaaactggcc
agggttttcctggagttcaaagaagactacttccaggtgcccaggaacctcgtaggcaaa
gtgatcggcaagaacggaaaagtcattcaggagatcgtagacaagtcgggtgtggttcgg
gtccggatcgagggggacaacgacaaaaagcttccccgggaggaggtaggcaggcagggg
gctggcagagaagacactgcccctaaacaagagggcatggtccccttcgtctttgtggga
actaaggagaacatcagcaatgcccaggccctgctggagtaccatgtggcctacctacag
gaagtggagcagctgcgtctggagcggctgcagattgatgagcagctccgtcagatcggg
gtgggttatcgtgctccccctagtcgggtcgggggcactggtcccggggacagggagaag
ggctacctgacggacgagagcagcaactccaccaacctccactcctcccgcatctatgga
ggccgcggccgagggcgcaggccctccaacagccagtactctggatatggtaccaactct
gagcagtccaacgcctctgagcctgaggacctcaatgagcgtgaccagcgtccacgtggc
gtgggtggagatgagcgaggctcccgccggggtggcaggggccgtggatccaacaccgga
cggggccgcggaggacccgcctcaagaccttccaactcaatcagctccgtgctgaaggac
ccggacagcaacccgttctccctgctggagggtgagagtgagcagggtgacacagatgcc
agtgagggggtgggagaggtagacctcaggagacgctctcgccgtcgccgcaatgaccag
gagcccagtgtgatggacgccgctgccacagagtcagacagccaggccggacccaacgag
aatggactggatgagcagggcagaccccagcgccgcaacaggagccgccgtcgccgtaac
cgtggcaatcacccagagggaggatccgccagctgtgacagactgccagttgaagtgacc
gtggcagactacatctcccgcgccgagtcccagagccgacagacccttccccaggaaaca
cttgctgctcccgaactcaaggaaaacgggagcagtgccaagagggacgagcacatggcc
ccctccaagcgttcccctagcaatggcatggccacacccagcgagacccttgtcaacggc
gtctcgtag
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