Oncorhynchus nerka (sockeye salmon): 115138075
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Entry
115138075 CDS
T07952
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one02010
ABC transporters
one04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115138075
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115138075
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115138075
Transporters [BR:
one02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
115138075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DUF4162
AAA_23
MukB
Motif
Other DBs
NCBI-GeneID:
115138075
NCBI-ProteinID:
XP_029530342
LinkDB
All DBs
Position
LG12:complement(7362351..7597079)
Genome browser
AA seq
2251 aa
AA seq
DB search
MGLLTQLGLLLWKNFTLRKRQKVRLVVELLWPLFLFFILVWVRSTTQPIYQGECHYPNKA
MPSAGVLPWLQGMMCNIDNPCVNHSTPGEAPGQVNNFNNSIIAGMLIELQSLLANRSIIT
KIQTLSDDVDQWVLTMNHEKGQPIPLRSILNDNEMFTTYLRENLSMPSTVADGLITSNIR
LNEVMGISRQDDLRITLCSGTALDRYVEFTRAFDKEAFQNVSCSLTAQQLRQTRDVFLQN
LDPRKMLTNLPSALDLAPSETFGLVRKTTEDALTVIDEMNKLQNSMLFKAADRLDFRADA
FGSLNILLCGKVSNSNSTKTTMNFPAFGAMRNDTENKARSSNSSAFCKVLIDTLEGTPGL
RIVWRTFRPLIQGKILYTPDTPATRLMVKEANSTFNALAMLKELLEAWEDFEPRGWNYFQ
NGPQASALRAFLDNPVFAAALNHGLEGTRWTEELLANFLYIGPPEDRPAGMPPNDWRDMF
NATSQILDLLKKFIGCLDLDKFEAVGSEGHLVARALELLENHTYWAGIVFEDLDPAASHP
PPYVKYKIRLDIDEGESTNKIKERGWSPGARDSFNNLRYIWGGFAYLQDMMDHGIIRVHT
NKSQPLGVFAQQMPYPCYVDDVFLASIGTMLPMYLVLAFMYTVCMTIKGLVLEKELRLKE
VQRAVGVQNGAIWFAWFTENFVLLMVPCAFISVMVKYGKVLQYSDPSVIFVFLLVFCVAT
IMECFFISVFFSKANLAAACGGLIYFVLYLPHLLCYAWRDVMDFQVKIAVSLLSCVAFGY
GCENFAKYEEQGIGIQWSNIAQNPEDGDQYSFIVSIIMMLVDSLIYWLLTWYIENVFPGQ
YGIAKPWYFPLTASYWCGTSPAPNADPSQFKDPIEYTGYLEKPPLNMKAGVSIRNLVKIY
KTGKKLAVDGLTVDFFENHITSFLGHNGAGKTTTMSILTGLFAPTSGTALINGYDIRTDM
DTIRKHLGMCPQHNVLFNDLTVEEHIYFYSRLKGRSRDEVKTEIDQMIEDVGLPHKRKEF
AKNLSGGMQRKLSVAIAFVGGSNIVILDEPTAGVDPYARRGIWELLLKYKQGRTIILSTH
HMDEADILGDRIAIISHGKMCCYGSSLFLKKYFGSGYYLTLVKAGDQQMTNQCTGVEQRQ
VKEETGESLRRTSLVEGIARQNWSNSEPTDVSKVVCRHVPEAVFLESIGQEITYILPYGG
AKDGSFALLFKELDLKMADIGVTNYGISDTTLEEIFLKVAEDTGVDAEIPAINTALVRDK
TRSSRESKRQRQTLTKVGDTSDEMPGKSAEDEMKVKFTSRVEDVERVANVNGKGSSVITG
WELIRRQFLALFIKRFHHARRSRKGLIAQVILPAVFVCLSLIFSVIVPPFAEYPNLELQP
WMYGLPQTTFYSNDGPPNNTEVARVADSLVNNPGFGTRCMANNPIPNLPCVPNDSKWFTP
TVDPSISNIFVNGNWSMANPSPNCQCSTPQKTTMLPDCPPGAGGLPPPQRTQNTTDTLQD
MTGRNMTDFLLKTYKEAGRKRYGGISVGGVNSQVRMTEPEIEAVIRDLRSLFNSSQDNTT
DQMLLNTEMLLKELGTRDNVKVWFYNQAWHGIVSFLNVANNAILRGNLPPGHDPREYGIS
SSSHPLNLTKAQLSYQAMAATSTDVVVSICVIFAMSFIPASFVLFLIQERVSKAKHLQFV
SGVNPTVYWVANFAWDICNYIVPCLIVIVIFLCFQQKAYVSLPNLPALILLLMMYGWSIT
PMMYPASFIFNVPSTAYVVLTCINLFIGINGSVATFVMELFADDNISKINGIVKQVLLIF
PHFCLGRGLIDMGKNQAMATLYDSFGEDRYQDPLSWDMVGKNLCAMAIQGAVMFTITLLI
QYKFCCKPRLISGESFSKEDEDVDVARERARIHKGGSEKDLLRICDLSKVYSGKKIPAVD
RVCVGVPAAECFGLLGINGAGKTTTFKMLTGDISISGGEAFLNGYSIRTEMRDVHQNMGY
CPQFDALNDLLTGREHLEFYARLRGVPEKEVPMVAEWGIQKLGLVKYSNKSAGTYSGGNK
RKLSTAMALIGCPPVVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEAL
CTRMAIMVNGQFKCLGSIQHLKSRFGEGYTVIVRVGGSPPALGPVEEFVHESFPGSVLKE
KHHNTLQYQVPHSEGALASIFSHFTTHQQRLGVEDYSVSQTTLDQVFVNFARYQQEEDNQ
ALQAYDNNVDVSDEMPMETRISTDSTVPESV
NT seq
6756 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacacaactcggtctgctcctgtggaagaacttcactcttcggaagaga
caaaaggtgcgtctggtggtggagctgttgtggcctctctttctattcttcatcctggtc
tgggtgagatcaaccacccaacccatttaccagggcgaatgtcattatccaaataaagcc
atgccttccgccggtgtgctgccttggcttcaaggcatgatgtgtaacatagacaaccca
tgtgtcaaccattccacgccgggagaagcaccgggacaagtcaacaacttcaacaattcc
ataattgctgggatgttgatcgagttacagtcacttctggcgaacagatccatcataacc
aagatccagacgctttccgatgatgtggaccagtgggttttaaccatgaaccatgaaaaa
ggtcagcccattcctctgagaagtatcctgaatgacaatgaaatgttcaccacatatctg
agggaaaacttgtccatgccatcgacggtagccgacggtctgattacctcaaatattcgc
ctgaatgaggtgatgggcatttcaaggcaagacgatctgaggatcaccctttgcagtgga
acagctcttgatagatacgtggaattcacccgcgcctttgacaaggaggcctttcagaac
gtcagctgctccctcacagcgcagcagttgagacaaaccagagacgttttcctacaaaac
ctggatccaaggaaaatgctcaccaatctaccttcagctttggatttggctccgtccgag
acctttggattagtgagaaaaactacagaggatgccttaaccgtgattgatgagatgaac
aagttgcagaactcaatgttgttcaaggccgctgataggctggatttcagagcagatgca
tttggcagtctgaacatcctactttgtgggaaagtatcaaactccaactccaccaagacc
accatgaatttccctgcttttggagcgatgaggaatgacacagaaaacaaggccaggagc
agcaattccagtgccttctgcaaagtactgattgacactcttgagggaactcctggccta
cgtattgtttggaggacatttcggcccctaatccaagggaagatcctctacacccctgac
acacctgcaactagactaatggtgaaagaggcaaatagtactttcaacgcattggccatg
ttgaaagagttgttggaagcttgggaggattttgaaccacgtggttggaactactttcaa
aatggcccccaagccagtgcactgcgggcctttctggataacccggtgtttgcagccgca
ctcaaccacgggctcgaaggcacaagatggacggaagaactgctcgccaacttcctgtac
atcgggccccctgaggaccgccccgcgggcatgccgccgaatgactggcgcgacatgttc
aacgccaccagccaaatcctggacctcctgaagaagttcattgggtgcctggacctggat
aagtttgaggctgttggcagtgagggacatctcgtggctagagccttggagcttctagaa
aaccatacgtactgggctggtatagttttcgaagacctcgaccctgccgccagccacccc
cctccttacgtcaagtacaagatccgcttggacatcgatgagggggagagtaccaataag
attaaagaaaggggatggtctcccggggcccgtgactccttcaacaacctgcgctatata
tggggaggcttcgcctatctgcaggacatgatggaccacggcattatacgggtgcacacg
aacaaatcacagccgctcggcgtgtttgcccagcaaatgccgtatccctgctacgtggac
gacgtcttcctcgcgagtatcggaaccatgcttcccatgtacctggtgcttgccttcatg
tacaccgtctgcatgaccatcaagggcctcgtcctggagaaggagctcaggctcaaggag
gttcagcgggccgttggagttcagaacggtgccatttggtttgcgtggttcaccgagaac
tttgtcctgctcatggtcccatgcgcattcataagtgtcatggttaagtatgggaaggtg
ctgcagtacagcgacccctcagtgatcttcgtcttcctgctggtcttctgcgtggccacc
atcatggagtgtttctttatcagcgtcttcttctccaaggccaacctggcggcggcgtgc
ggaggcctcatctacttcgtcctctacctgccgcacctcctctgctatgcctggagggac
gtcatggatttccaggtcaaaatcgctgtgagtttgctgtcgtgcgtggccttcgggtat
ggctgtgagaactttgccaagtatgaggagcagggcatcggtattcagtggagtaacatc
gcccaaaatcctgaagacggagaccagtatagcttcatcgtgtccatcatcatgatgcta
gtcgactccctcatctactggctgctcacgtggtacatcgagaacgtcttcccaggccaa
tatggaatagcaaagccatggtacttcccactcaccgcctcctattggtgtgggacttca
ccggcgcccaatgctgaccccagtcagttcaaggaccccattgaatacaccggttatttg
gaaaagccaccactcaatatgaaggcaggggtctcaatcaggaaccttgtcaagatctat
aaaactgggaaaaagcttgcagtggatggactaactgtggacttcttcgagaatcacatc
acctctttccttggtcacaatggggcaggaaaaacaaccaccatgtcgatcctgacagga
ctcttcgctccgacgtcggggaccgctctaataaacggttatgatatccgcacagacatg
gacaccattagaaagcatctgggaatgtgccctcagcacaatgtcttattcaatgacctc
acagtggaggaacacatctacttctactccagattaaagggacgaagccgagatgaagtg
aaaacggagattgaccaaatgatcgaggatgtcgggctgccacacaaacgcaaggaattt
gccaagaacctgtcagggggaatgcagaggaaattgtcggtggcaatcgcattcgtggga
gggtccaacatcgtcatcctggatgaacccacagcgggggtggacccatacgcccggagg
gggatatgggaactactgttgaagtacaaacaaggtcgcacaatcatcctctccactcat
cacatggatgaggcggacatcttgggagaccgcattgccattatctctcacggcaagatg
tgttgctatggctcctccctgttcttgaagaaatactttggcagtggctactacctcact
ctggtcaaggccggagaccagcaaatgaccaaccagtgcactggagtcgagcagcgccag
gtgaaagaggagactggtgagtcattgaggagaaccagtctggttgaagggatcgcacga
cagaactggagtaactctgaacccacagatgtcagcaaggtggtatgtcggcatgttccc
gaggcggtgttcctcgagagcatcggccaggagatcacctacatccttccctatggcggg
gccaaggatggcagctttgcactcctcttcaaagagctggacctcaagatggccgacatt
ggtgtcaccaactacggcatctcagataccacactagaggagattttcctcaaagtggca
gaggacacaggtgttgatgcggaaataccagctatcaacacagctttggtaagagacaag
acaagaagttcaagggaatccaagaggcaacggcaaaccctcaccaaagtcggggacact
tcagacgaaatgcctgggaaaagtgctgaagacgagatgaaagtgaagttcactagcaga
gtggaggatgtggagagagtggccaatgtgaatggaaagggctccagtgtgatcacggga
tgggaactgatccggagacagttcctggccctcttcattaaacgctttcaccacgcacgc
aggagccgcaaaggcctcattgctcaggtgattctgccagctgtcttcgtctgcctgtct
ctcatcttctccgtcatcgtcccgccttttgcggagtaccccaacctggagttgcagcct
tggatgtatggactgccccaaacgacattctacagcaatgatggaccgccaaataacacc
gaggttgctcgggtggcggactctttggtgaataatcctgggtttgggactcgctgcatg
gccaacaacccgataccaaatctcccatgtgtcccgaatgattctaagtggttcactccc
acagtggatccctctatcagcaacatcttcgtcaacggaaactggagcatggccaaccct
tcccctaactgccagtgcagcactcctcaaaagaccaccatgttgccagattgcccacct
ggagccggtgggctgcctccccctcagaggacccagaataccacagacacactgcaggac
atgacggggcggaacatgacagacttccttttaaagacctacaaggaagcaggcagaaaa
aggtatggagggatttctgtcggaggggtcaactcccaagtcaggatgactgaaccggaa
atagaagctgtgatcagggatttgaggagcctattcaattcctcccaggataacacaacc
gatcagatgctcctgaataccgagatgctcctgaaagagctcgggaccagggataatgtc
aaggtgtggttctacaaccaggcgtggcacggtattgtatcgttcctcaatgtggccaac
aacgccatcctgaggggcaacctgccgccgggtcatgaccccagagagtatggaatctcc
tcctccagccaccccctcaacctcaccaaggctcagctttcctaccaggcaatggccgcc
acctccaccgatgtggtggtgtccatctgtgtcatctttgccatgtccttcatcccagca
agcttcgtcctcttcctcatccaggagcgtgtcagcaaggccaagcacttgcagtttgtc
agtggcgtcaacccgaccgtctactgggtcgccaacttcgcctgggatatttgcaactac
atagtcccgtgtctaatagtcatcgtcatcttcctgtgtttccaacaaaaagcctacgtg
tcccttcctaacttaccagctttgattctgctactgatgatgtatgggtggtctatcaca
cccatgatgtacccagcctcgtttatcttcaacgttcccagcacggcctacgtggtgctg
acctgcatcaacctcttcatcggcatcaatgggagcgtggccaccttcgtcatggagttg
ttcgctgatgataacatctcgaaaatcaatggtattgtgaagcaggtgctgctgattttt
ccacacttctgtctgggtcgagggctcatcgacatgggcaagaaccaggctatggccacc
ttgtacgatagctttggggaagaccgttaccaggaccccctcagctgggacatggtgggg
aagaacctctgtgccatggccatccagggggcagtcatgttcaccatcactctccttatc
cagtataagttctgctgcaaacccagactgatttctggagagtcattctccaaggaggac
gaagatgtggacgtggcacgggaacgtgcacgcatccataaaggtggctcagagaaagac
ctgttgagaatctgcgatctttctaaggtgtactcggggaagaagattcctgctgtggac
agggtgtgtgtgggcgttccagccgcagagtgctttggacttctggggattaacggggca
ggaaaaaccaccaccttcaagatgctgacgggggacatctccatctccggaggggaggcc
ttcctaaacggatacagcatacggacagagatgagggacgttcaccagaacatgggctac
tgcccacagtttgacgccctcaacgaccttctcaccggacgagagcacctggagttctat
gccagactacgaggcgtaccggagaaagaagtccccatggtggcagagtggggcatccag
aagctaggcctggtcaaatactccaacaagtcagccggtacctacagtggagggaacaaa
cgcaagctctccaccgccatggctttgattggctgtcctcctgtggtcttcctggatgag
ccaacaacagggatggatcccaaagccagacgcttcctgtgggactgcatcctgagtgtc
atcaaagagggacgctcagtcatcctaacatcacacagcatggaggagtgtgaggcccta
tgcacgcgcatggccatcatggtgaatggacagttcaagtgtctgggcagcatccagcat
cttaagagcaggttcggagaaggctacactgtgatcgtgagggtgggcggctcgcccccc
gccctgggccccgtggaggagtttgtccacgagtccttccccggtagcgtactgaaggag
aagcaccacaacacgctgcagtaccaggtcccccacagcgagggcgctctggccagcatc
ttcagccatttcaccactcatcagcagaggctgggtgtggaggactactctgtctcccag
accactctggatcaggtctttgtcaactttgcgaggtaccaacaggaggaggacaatcag
gccctgcaagcttatgacaacaatgtggacgtgtccgacgaaatgccaatggaaactcgg
atctcaaccgactcaactgtaccagagagcgtctga
DBGET
integrated database retrieval system
