Oncorhynchus nerka (sockeye salmon): 115138092
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Entry
115138092 CDS
T07952
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115138092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115138092
03009 Ribosome biogenesis [BR:
one03009
]
115138092
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115138092
Spliceosome [BR:
one03041
]
Complex A
U2 snRNP components
U2 related factors
115138092
Complex B
115138092
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
115138092
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
90S particles
Helicases
115138092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SRP54
AAA_25
Glyco_hydro_98M
nSTAND3
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
115138092
NCBI-ProteinID:
XP_029530421
EnsemblRapid:
ENSONEG00000042145
LinkDB
All DBs
Position
LG12:complement(10415585..10449646)
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AA seq
748 aa
AA seq
DB search
MLQNSAKDASYMLVGSLLRLAIRRDRDRDRDERSRDRDRDAKLSGMALNPALGSAGLSHK
QTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILGRHQSFVLVGETGSGKT
TQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCS
SAKTFLKYMTDGMLLREAMNDPLLERYGVVILDEAHERTLATDILMGVLKEVVRQRSDLK
VIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEE
EEGDCLLFLTGQEEIDEACKRIKRDIDDLGHDAGDIKIIPLYSTLPPQQQQRIFEPPPPR
KPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQ
QRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDF
MDPPAPETLMRALELLNYVAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSNEI
LSITAMLSVPQCFVRPTEARKAADESKMRFAHIDGDHLTLLNVYHAFKQNHESTQWCYDN
FVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFTSRDYYINIRRALVTGFFMQVAHLERT
GHYLTVKDNQVVQLHPSTVLDHKPEWVMYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYE
MGNFPNCEAKRQLERIVAKLSTKEYSQY
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgttacagaacagtgcaaaagatgcatcatacatgctcgtgggtagcctcctgcgcttg
gccataaggcgagaccgcgacagggaccgcgacgagcggtcgagggacagagaccgggat
gccaagctctctggcatggccctgaacccggctcttggcagcgcaggcctctcccacaag
cagacggccatgcagcagcagatcaacccgttcaccaacctgccccacacgccgcgttac
tacgagatcctgaagaagaggctgcagctgccagtgtgggagtacaaggagcgcttcaac
gacatcctgggacgccaccagagtttcgtgctcgtcggagagacaggctccggcaagacc
acgcagatcccccagtggtgtgtggacatggttaaggggttgggcggacctaagaaggca
gtggcctgtacccagcccaggagggtggcagcaatgagcgtggcccagagggtggccgac
gagatggacgtcatgctgggccaggaggtcggttactccattcgattcgaggactgcagc
tcggccaagaccttcctcaagtacatgacagacggtatgttgctgcgggaggccatgaac
gaccctctgctggagcgctacggcgtcgtcatcctggacgaggcccacgagagaacgctt
gccacagacatcctcatgggcgtcctcaaagaggtggtccgacagaggtcagacctcaag
gtcatcgtcatgagcgccacgctggatgccggcaagttccaggtgtactttgacagctgt
ccgctgctaaccatcccgggacgcacgcacccggtagagatcttctacacgccggaacct
gagagggactacctggaggcagccatccgcactgttatccagatccacatgtgtgaagag
gaggagggcgactgtctgctcttcctcactggacaagaggaaatcgacgaggcctgcaag
cgcatcaagagggacatcgacgacctgggacacgacgcgggggacatcaaaatcatcccg
ttgtactcgacgctgccgccccagcagcagcaaaggatctttgagccgccaccaccccgc
aagcccaacggagccatcgggaggaaggtcgtggtttcgacaaacatcgctgagacatcc
ctgaccattgacggtgtggtgtttgtaattgatcccggatttgccaagcaaaaggtgtat
aaccctcgtatcagagtggagtccctcctggtgacggccatcagcaaagcctcggcccag
cagagggcggggcgcgccgggaggacacgcccagggaagtgcttccgcctctacacagag
aaggcctacaagaccgagatgcaggacaacacgtatccagagattttgaggtccaacctg
ggttcggtcgtgctgcagctcaagaagctaggtatcgatgacttggtccatttcgacttc
atggacccaccagcaccggaaaccctgatgcgggccctggagctgctcaactacgtggcg
gcgctcaacgatgacggcgacttgacggagctaggctccatgatggccgagttcccccta
gacccgcagctagccaagatggtgattgcctcctgcgagttcaactgctccaatgagatc
ctgtccatcacagccatgctgtcagtcccacagtgcttcgtacgacccacggaggctagg
aaggcggccgacgagtccaagatgcgtttcgcccacattgacggagaccacctgaccctc
ctcaatgtctaccacgccttcaaacagaaccatgagtcgacacagtggtgctacgacaac
tttgtgaactacaggtcgctgatgtcggccgacaacgtgcgccagcagctgtcccggatc
atggaccgcttcagcctgccccgccgcagcacagagttcaccagcagagactactacatc
aacattcgcagagcgctggtcacaggattcttcatgcaggtagcccatttggagcgtaca
ggccactacctgactgtgaaggacaaccaggtggtccagctgcacccctccactgtgctg
gaccacaagccggagtgggtgatgtacaatgagtttgtgctgaccaccaaaaactacatc
cgcacctgcaccgacatcaaaccagagtggctggtgaaaatcgccccgcagtactatgag
atgggaaacttccccaactgtgaagccaagagacagttggagcgcatcgtagctaaactc
tcaaccaaggaatactctcagtactaa
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