Oncorhynchus nerka (sockeye salmon): 115138094
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Entry
115138094 CDS
T07952
Symbol
frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115138094 (frem1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
one04091
]
115138094 (frem1)
Lectins [BR:
one04091
]
C-Type lectins
Lecticans
115138094 (frem1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Big_9
Motif
Other DBs
NCBI-GeneID:
115138094
NCBI-ProteinID:
XP_029530427
LinkDB
All DBs
Position
LG12:complement(10629719..10663298)
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AA seq
2200 aa
AA seq
DB search
MGLQRGVLRWALPWLLLVMAGGSHGSLVKTNLGLRVKRGQSAYLQEGDLQFHIPPAKDAC
KVEVVLNEPITQRVGTLTPQVFDCHYLADDVKYVHNGCPILKEDTVKLRLYRFTETETFT
EVFFLRVEILEPDCNIIKLGPKSLVVPEFYGLSDTLDGNVVSFHYERMTSLECNIRVNTH
ETHLPGHGQLVIGEPDQLEARGDEPESFIPLRQQLDNKARAMCKTEDCLNGLKLAKVIKV
PCDEFLVMGLRYQHIDPPSPDVDYIALRLDLTDTRSGSIYQSERAWIPVHIPGAVPNQPP
KPAFMSMFILEVDQFILTPLSTATLDAEDGETPKQLLVFNITKPPLEGFITHLSDQTRPI
FSFTWVDLNDMLIGYQPPNSSHTQRRNYEVEFEVHDFFFEKSAPIMVHMSVRTADTNAPR
VSWNMGLSLLEGQSRPITWDQLQIVDNDNFKAVRIITVDGLQHGRLTLRGGKGFMFTVAD
ILAGAVRYHHDDSDTTKDFIIFRITDGRHQTRHKFPINILPKDDSPPFLITNTVLELSEG
HTALLRGSILQASDMDSSDDYILFNITRPPQAGELMKIPGPGLTGYPVSRFLQKDLFHSV
VYYRHLGNEVFDDSFEVVLSDFHDPPNLSEPQVIVVHISPVPDQPPKEVPGVTRCLVVKE
TEVVHLTKKQLHFIDLESPDSELTYTVTTPPFYSRSYGGHDAGRLFLVDSIAKFTKDAEA
PVLRLFTQHAVNYMKVAYMPPILDIGPYPQHIQLVLSVTNQQGTTVAGICFNITVVPVDN
LAPEVHMKPLTVDEGGECWVGPDHLLLADHDSTEESLRVELKREPQHGAVQLDGFSMKAG
QNFTVHDLKSLKVRYHHDSSETVGDAIELIATDGINAINFVLEVKVTLINDEVPVLMPGL
KPVLDCAEGQEVIITAEYIYATDADSDDNSLTYMIARQPYHGVVRKNAIVVDRFIQADIV
AGSITYEHTGAEIGLAPRHDTITFVISDGQAENAPSCRNDRGDTLKRGRTQVQESLPLYD
LKVTVFPVDSQMPSIATGDVFVVDEGGVAPITVAHLSASDVDTPLEELVISLVSPPQYGY
IENILPSPGFEKSNTGISIASFSYSDIMNGHVNYVQSRHQRIEPTADQFMLCVSDGKHTS
AHVHFYIIINPINDEVPEFLARNITVREGHMKELDPAVINAVDLDIPKNNLLFSVVQAPR
HGTIMGRTYGNDVPANGRPVNRHRDAEVLVQDFTMQELRNGMSLMYMHDDSENMVDSFTI
QLNDGKHQLQRHVMVNVLPVNDEEPRVIRNIGLEVEAGEARLISSAILFAQDSDTTSQEI
VYMLESVPTQGLLQVKVGSDWVTQSAGMNCTQETVDMNLLRYLHTGPLGHTQDFFVFHLL
DGKNRSPAQHFHISLKDMEKGDIAISVKPVKTSRGERVVLTTDVLLATDGTDKPEELFYI
VTVPPGNGHMEYIKHPGVAISTFSQMDIAANLVGYVHDNRATASLETLQFVVSNGKATRN
GTLEIYVETTDRVLPSLTCNSGLRVPQDSSMAVTPDALALSDPDTPPSDLLFFLAQPPQY
GTLLRGGVPLAAGGNFTQWDLQELEVTYRHGGGPSQIDRFAFTASDTTNRSFLLEGRVQM
EPVIFTIQIEPLDSSAPEVVQLQSLWKAEVLSDGRYGIYLSYRELRAQDGNTKDEDLTFH
IHRPPYFGYLENTIKGSFIQQHFTQRDLSKRTIVYIIDPATEALSDSLEFRVSDPLGNTG
PSHTLELKWSRVELAVSEYQACEDQGTVSLDVLRKGNMAESSYITIKAREVTATAGKDFT
LSPSSLIQFDPGVSKRSWRIEITQDHLEEAEETFEVTLVSPEGTVVGSTSKALVKIKDSG
KGQCGSSRAPKGSSLGGKQVQSGPYPQHGSIHLETLPLAKGDQQMTWTRGDGMPQSVPAA
VPATPHMKLRAMANRETIPPSSVHRNGTDTVFTYHGIMSVRLEDDKSPSRKGRKANIQVT
SRGRQQHAAAAPPVAPNLNPKPVPKTKSDSLLPRTMPEKPNKEPSPSSGPKPCVPELMGL
LHFNQSSGGLLRCNGVSWKPWAPTDEMVSAQNCRKGWTYHSGNCYFLSTERKSSWSTAIR
ACRESHQANLVSVFSKADMDWLWDFSGRKPFWIGLNDRESRGRWEWVGGEPITYTNWRKS
PARGKRKGTRRCVLVWRRAKWQIRDCKTGRGHLYMCYIKT
NT seq
6603 nt
NT seq
+upstream
nt +downstream
nt
atgggtttacagagaggggtactacgatgggcacttccctggctgctgttggtcatggct
ggagggtcacacggctccctggtgaagactaacctagggttgagggtgaagaggggccag
tcggcctacctgcaggagggggacctgcagttccacatccccccggcgaaggacgcctgc
aaggtggaggtggtgctcaacgagccaattacgcagagggtggggacgctgacaccccag
gtgtttgactgccactacctggctgatgacgtaaagtatgtccacaatggctgcccgata
ctaaaagaagatactgtcaagcttcgactctacaggttcacagagacagagacctttaca
gaggtcttcttcctgcgtgtggagatcttggaacctgactgcaacatcatcaaactaggg
cccaagtccctggtggtgccagagttctacggcctgtccgacacgctggatggcaacgtg
gtgtccttccactatgagaggatgaccagtcttgagtgtaacatccgtgtgaacacccac
gagacacacctcccgggtcatggtcagttggtcattggggagccagaccagctggaggcc
agaggggacgagccggagagcttcattcctctccggcagcagctagataacaaggccagg
gccatgtgtaagactgaggactgcctgaacggcctgaagctggcaaaggttatcaaagtg
ccctgtgatgagttcctggtgatgggccttaggtaccagcacatagacccaccgtctcca
gacgtagactacatcgccctccgactggacctcaccgacaccaggagcgggagcatatac
cagtcggagcgggcctggatacctgtccacatccctggcgctgttcccaaccagccgccc
aagccagccttcatgtccatgtttatcctggaagtggaccaattcatcctcacacccctc
tccactgccaccctggacgcagaggacggagagacccccaaacagctgctggtgttcaac
atcaccaagccccccctagagggcttcatcacccacctgtcagaccaaacgcgacccatc
ttctccttcacctgggtggacctcaacgacatgcttatcggctaccagccgcccaactca
tcccacacccagcgtaggaactatgaggtggagtttgaggtacatgacttcttctttgag
aagagcgccccgatcatggtccacatgtcagttagaacagcagacaccaatgcacccagg
gtgtcatggaacatgggtcttagtcttcttgaaggtcagtctcgtccaatcacttgggat
cagctccagattgtggacaacgacaacttcaaggctgtacgcatcatcactgtcgacggc
ctccagcatggcaggctaacactgagaggtggcaagggtttcatgttcactgttgccgac
atcctcgcgggcgctgtgcgctaccatcacgacgacagcgacaccaccaaggacttcatc
atcttccgcatcaccgatgggcgccaccagacccggcacaagttccccatcaacatcctg
cccaaggatgacagcccaccattcctcatcaccaacacagtgctggagctctctgagggc
cacacggccctgctgagaggatccatactgcaggcctcagacatggactcaagcgacgac
tacatcctgttcaacatcacccggccaccgcaagctggagagctcatgaagatccctggt
cctggactcactggttatcctgtcagccgtttcctgcagaaggacttgttccactctgtg
gtctactaccgccatctagggaatgaggtgtttgatgactccttcgaggtggtgctctcg
gacttccatgacccacccaacctttcagaacctcaggtcatagtggtgcacatcagccct
gtgcctgaccagccacctaaagaggtccctggggtgactcgctgcctggtggtcaaagag
acagaggtggtccacctgaccaagaagcagcttcacttcatcgacctggagtcccctgac
agcgagctcacatacactgttaccactccgcccttctacagcaggtcttatgggggccat
gatgcagggaggctgttcctggttgacagcattgccaaattcaccaaggatgctgaagcc
ccagtgttaaggttattcacacagcatgcagtcaactacatgaaagtggcctacatgcct
cccatcctggacattgggccttacccgcagcacatccagttggtgctctccgtcaccaac
cagcagggaaccacagtcgctggcatctgcttcaacattacagtggtgccagtggacaac
ctggccccagaggtgcacatgaaacctctgacagtggacgagggtggggagtgctgggtg
ggtccggaccacctgctgctggcagaccatgactcgacagaagagagcctgagagtggag
ctgaagagagagcctcagcacggagctgttcagctggatggcttctccatgaaagcgggc
cagaacttcactgttcacgacctgaaaagcctaaaagttagatatcaccacgacagctcg
gaaacagtgggtgatgccattgaattaatcgctaccgatggaattaacgcaatcaacttt
gttctggaagttaaggtgacactgatcaatgatgaggttccagttctcatgccaggtctg
aaacctgttctggactgtgcagagggacaggaagtcatcatcaccgctgagtacatttat
gcaacagacgcagacagtgacgataacagtctgacctacatgattgcccgtcagccatac
catggcgtggtgcgcaaaaacgccattgtggtcgatcgcttcattcaggcagacattgtc
gcagggagtatcacctacgaacacacaggagcggagattggactagcccctcgacacgac
acaatcacgtttgtgatatccgacgggcaggcggagaacgctccgtcatgccgtaatgac
cgaggggacacattgaaaagaggcaggacacaagtccaggagagcctgcctctgtatgac
ctgaaggtcaccgtgttccctgtggacagtcagatgccttctattgcaacaggagatgtg
tttgtggtggatgaagggggtgtggcccctataactgtagcccacctcagtgcctcggat
gtggacactcccctggaggagctggtgatcagcctggtctctcctccccagtatggctac
attgagaatatcctgcccagtcctggatttgagaaaagcaacacaggcatcagcatcgcc
tccttctcttacagtgacatcatgaacggacatgtgaactatgtccagtccagacaccag
aggatcgagccaaccgctgaccagttcatgctctgcgtctctgacgggaaacacacctcg
gcccacgtccacttctacatcatcatcaaccccatcaatgacgaggtcccggagtttctc
gccagaaatatcacggtgcgagagggccatatgaaggagctggaccctgctgttataaac
gcggtggatctggacatccctaagaacaacctgctgttcagcgtggtccaggccccccgg
catggcaccatcatgggccgaacgtatggcaacgacgtgcccgccaatggaagacccgtc
aacaggcacagggacgcagaggtgctggtccaggacttcaccatgcaggagttgaggaat
ggtatgtctctgatgtacatgcatgatgactctgagaacatggtggacagcttcaccatc
cagctgaacgatgggaaacaccagctccagaggcacgtgatggtcaacgtgctccctgtc
aatgacgaggagcctcgagtcataaggaacattggactggaggtggaggcaggcgaggct
aggctgatctccagtgctattctctttgctcaggacagcgacactacctctcaggagata
gtctacatgttggagagcgttcccactcagggactgctacaggttaaggtaggctctgac
tgggtaacccagtctgcggggatgaactgcacccaggagacagtggacatgaacctgctg
cgctacctccataccgggccactgggacacacacaggatttctttgtgttccacctgctg
gacgggaagaaccgctcccccgcgcagcacttccacatctccctcaaggacatggagaaa
ggagacattgccatttctgtgaagccggtgaagaccagccgcggtgagcgcgtggttctg
accacagacgtcctgctggcgacggacggtacagacaaacccgaggagctgttctacatc
gttacagtcccccccggcaacggccacatggagtacatcaaacaccccggggtggccatc
agcaccttcagccagatggacatcgctgccaacctggtgggctacgtccacgataacaga
gccaccgcgtcgttggagacactacagttcgtcgtcagcaatggcaaggccacccgtaac
ggcaccctggagatttacgttgagaccaccgaccgcgtgctgccatcactgacctgtaac
agcggcttgagagtccctcaggactcctccatggcggtgacccctgacgccctcgccttg
tccgaccccgacaccccacccagtgacctgctcttcttcctggcccagcctcctcagtac
ggcacactgcttcgtggcggtgtcccgctcgctgccgggggtaacttcacccagtgggac
ctgcaggagctggaggtgacttacaggcacgggggcggcccgtcgcagatcgaccgcttt
gccttcacggcctcagacactaccaacagaagtttcctgctggaggggagggtacagatg
gaacctgttatctttaccattcagattgagcctttggacagctcggctcctgaggttgtg
cagctgcagtctctgtggaaggctgaagtcctgtctgacggtcgctatgggatctacctc
tcgtaccgggagctgagagcgcaggacggcaacaccaaggacgaagacctcaccttccac
atccacagaccaccatactttggctacctggagaatacgattaaaggcagctttatccag
cagcatttcactcagagggacctgagcaaaaggactatcgtgtatatcatagacccagcg
acagaagccctgtcggacagcctggagttcagagtgtccgaccccctggggaacactggg
ccctcccacacgctggagctgaagtggtctcgtgtggagctggctgtgtctgagtaccag
gcatgtgaggaccagggcactgtctcactggacgtcctacggaaaggcaacatggccgag
tcctcgtacatcaccatcaaggcgagagaggtcacagcgactgctggaaaggatttcact
ctgagcccgtccagcctaatccagtttgatcctggcgtatccaaaaggagctggcgtatt
gaaattacccaagatcacctggaggaggcagaggagacatttgaagtgacactggtgtcc
cctgagggaaccgtagtaggcagcacctccaaagcgctggttaaaatcaaggactctggg
aaaggacagtgtggatccagtcgggcccctaagggctccagtctgggggggaagcaggtt
cagtcagggccgtacccccagcatggctccattcatttggagacactaccccttgccaag
ggagaccagcagatgacctggacccggggcgatggtatgccccagtctgtgcccgctgct
gtgcccgccacgccccatatgaaactcagagctatggccaacagagagacgattccacca
tcgtcagtccatcgtaatggaacagacactgtgttcacgtaccacgggatcatgtccgtg
cgcctggaggatgacaagtctccgtctaggaagggaaggaaggctaatattcaggtgacc
agcagagggcggcagcaacatgcagccgcagcaccaccagtggctcccaacctcaaccct
aaacctgtccctaagactaagagtgacagcttgctcccacgtacaatgcctgagaagccc
aataaggagccttcacctagctctggccctaaaccctgtgtcccagagctgatggggctc
ctacactttaaccagagctcaggcgggctcctccgctgcaacggggtctcctggaagcca
tgggctcccactgatgagatggtcagtgctcagaattgtcgtaagggctggacctatcac
agcggcaactgctacttcctgagcaccgagcgcaagtcgtcgtggagcaccgccatcagg
gcatgcagggagagtcaccaagccaatctggtgagcgttttttccaaggctgacatggac
tggctgtgggacttcagtggaaggaagccattctggataggtctaaacgacagggagagc
cgaggacgctgggagtgggtgggtggagaacccatcacctacaccaactggaggaagagc
ccggccagaggcaagaggaaggggaccaggaggtgtgttctggtgtggaggagggccaag
tggcagatcagagactgtaagacgggcaggggacatctctacatgtgttacatcaagacg
tga
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