Oncorhynchus nerka (sockeye salmon): 115138172
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Entry
115138172 CDS
T07952
Name
(RefSeq) splicing factor 1-like isoform X1
KO
K13095
splicing factor 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115138172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115138172
Spliceosome [BR:
one03041
]
Complex A
Other components
Complex A specific factors
115138172
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GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
KH_12
SLU7_N
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
115138172
NCBI-ProteinID:
XP_029530570
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All DBs
Position
LG12:complement(14024515..14037763)
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AA seq
681 aa
AA seq
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MATGANATPLGKLHPSIGAKRGFEAGPGAGLMPTPGPPVSFPSLPNFQPPIPNVSFPQAH
PVFTAVAAFPTPPQPPIGAGIPSQSDFGQKKARKRSRWSSETPDQKTVIPGMPTVIPPGL
TRDQERAYIVQLQIEDLTRKLRTGDLGIPVNPEDRSPSPEPIYNSEGKRLNTREYRTRKK
IEEERHSLITDMVALNPEFKPPADYKPPATRVNDKVMIPQDEYPEINFVGLLIGPRGNTL
KNIEKECCAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRT
ILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQSTEPRSVTNTTLCTKCGG
AGHISSDCKFTSSFAAPRAGEPPQSAQDKARMDKEYLSLMAELGEAPVPSSGGGHCNNQN
SGHNRGNNNNQPPPSRPPWMNSGQSENRNFNSMHGGHGGHGNQHGGHGNHGGHGGHHNFP
PPMSNMGGHNMPHNNGMPPPWMQPPPPPMGQGHGHHMGLLPPPMGMMPPPPPPPNNQPPP
PPSGPLPPWQQQAPPPPPASSMATSVPLPWQQNTTTTSSPGSGNLPPWQQPQQSAASAAQ
PPPPMGNPSMVPPPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPMDPSNFVTMMGM
GVTGMPPFGMPPAPPPPPPQN
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggctacgggagcaaatgcaacccctctggggaagctgcacccgagtattggcgctaaa
cgaggctttgaagccgggcccggtgcggggttaatgcctacaccggggccgcctgtttcc
tttccttcgctcccgaattttcagcccccaattccaaacgtctctttcccgcaagctcac
ccagtatttactgcggtggccgcttttcccaccccgccacaaccaccgataggagcagga
attccgtctcagtcagacttcggtcagaaaaaagccaggaaaagaagccgctggagtagc
gagacacccgaccagaagacagtcattcctggcatgcccaccgtcatcccgcctggactg
actcgggatcaggagagggcctatatagtccaactgcagatcgaagacctgactcgtaaa
ctgcgtacaggagacctgggaatccctgttaaccctgaggacaggtccccgtctccagag
cccatctacaacagcgaggggaagaggctgaataccagggagtaccgcacacgcaagaag
atcgaggaggagcgtcactccctcatcaccgatatggtggcactcaaccctgagttcaag
ccccccgctgactacaagcccccagctactagggtcaacgacaaggtgatgatcccacag
gacgagtaccccgagattaactttgttgggttgctcattgggccacgtggcaacaccctg
aagaacatagagaaggagtgctgtgccaagatcatgatccgtggcaagggctctgtgaag
gagggcaaggtgggccgtaaggacggtcagatgctgccaggggaggacgagccgctgcac
gccctggtcaccgccaacaccatggagaacgtcaagaaggcggtggaacagatccgtacc
atcctgaagcagggcatcgagacccccgaggaccagaacgacctgaggaagatgcagctg
agggagctggccagactcaacggcaccctgagagaggacgacaaccggattcttcgtccg
tggcagagcactgaaccccgcagtgtcaccaacaccaccctctgtaccaagtgcggtggc
gcaggccatatctcctctgactgcaagttcaccagctcctttgcggcgcccagggcaggt
gagcctccccagtctgcccaggacaaggcccgtatggacaaggagtatctgtccctcatg
gctgagctaggcgaggcccctgtaccttcctctggcgggggacactgcaacaaccagaac
agtggccacaacagaggcaacaacaacaaccagccaccaccgagccgtcctccctggatg
aactctggccagtctgagaacaggaacttcaacagcatgcacggaggccacggcggtcat
ggcaaccaacacgggggtcatggcaaccacggaggtcacggaggccaccacaacttccca
ccccccatgtccaacatgggagggcacaacatgccccacaacaatggaatgccacccccg
tggatgcagcccccaccgccccccatgggccagggacacggccaccatatgggtctgctg
ccaccacccatgggtatgatgccaccaccacctccgccccccaacaaccagcctcccccg
ccaccctcaggtcccctgccaccatggcaacagcaggcccccccaccccctcccgccagc
agcatggccactagtgtaccactgccatggcaacaaaataccaccacaacatccagtcct
ggctctggcaacctgcccccctggcagcagccccaacagtccgctgcctcggccgcccag
ccccctccccccatgggcaacccctccatggtcccccctccgccaggggtgcagccccct
ctcccccccggcgccccacctccccctcctcccccaccccccggctcggctggcatgatg
tacgcccctcctccccctccgcccatggacccctccaactttgtcaccatgatggggatg
ggggtgacgggcatgccccccttcggtatgccccccgcaccaccacctccaccccctcag
aattaa
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