Oncorhynchus nerka (sockeye salmon): 115138227
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Entry
115138227 CDS
T07952
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115138227 (col25a1)
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115138227 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115138227
NCBI-ProteinID:
XP_029530704
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Position
LG12:complement(19250478..19616522)
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AA seq
673 aa
AA seq
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MERETTSLKQQYCCTTVMNVISSLFSVASLAFCILLSVQTSAIADRVLDLETGHGEQIFH
RVPSFSVDQFNSLIQERVDELLSQRSYENLSKVRIARQVSHTPDCNCPPGPPGKRGRRGR
NGEPGPPGPPGLQGDKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGSAGPPGP
PGPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGTPGELGLMGPEGPPGQKGSLGPPGIPGV
DGLKGEMGERGEKGDMGEDGQKGEVGEKGDAGSSAAGIKGEPGESGRGGSKGEPGLPGLP
GLPGIKGEPGFLGPQGEPGLPGLPGTKGERGELGPPGKGERGEPGQAGQKGGPGEAGNPG
PRGSKGETGDKGDLGSMGPWGPPGQKGDQGATEIIDYNGNIQEALQKITTITVTGPPGPP
GLSGPAGIKGDQGMPGLPGLDGERGFKGSKGDMGIPGTSGDKGTVGLPGLPGVNGLKGDK
GDSGLPGPEGPSIIGQPGAPGPHGSPGPMGPHGFPGPKGEAGNHGLKGVRGESGHKGDRG
PLGLPGASGLDSKPGIRGMDGPVGSSGPAGPKGDRGERGAAGELGPRGPYGLPGAAGTPG
LDGLPGLRGEKGDPGERGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCW
QKRSSRIHLYPNT
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggagagagaaacgacatctttgaagcagcaatattgctgcacaactgttatgaacgtt
atctcgtctttattctctgtagcgtcccttgccttttgcatattattaagtgtacaaaca
tcagcgatcgcggacagggtcctggatttggaaactggacatggcgagcaaatctttcac
agggtccccagtttttctgtggatcagtttaattcattgattcaagagagagtggatgag
ctcctgtcacagcgctcctatgaaaatttatcgaaggtacggattgcccgacaagttagc
catactcctgattgcaactgtcccccaggcccgccaggaaagcggggaagaagaggccgg
aatggcgaacctggacctcctggtcctcctggtcttcagggtgacaagggggatcaaggc
gaccaaggaccgcggatggtcttccctaagatcaatcatggctttctttctgctgaccag
cagctcataaagcggcggcttattaagggagatcagggttcggcaggtccaccagggcct
cctggacccccaggtccccctggcccccgagggccaccaggggacacaggcaaggatggg
ccccggggagtgccaggtctgccgggagatcctgggaccccaggagagctaggactaatg
ggacctgaggggccaccaggacaaaagggttccctcgggcctcctggcatcccaggtgtt
gatgggctgaagggtgaaatgggagagcgaggtgaaaagggtgacatgggagaagatggg
caaaaaggtgaagtcggggagaagggtgatgcaggctcctctgctgcaggcattaagggt
gaaccaggagagtcaggacgtgggggatcaaagggagagccaggacttccagggctgcct
ggacttcccgggattaagggtgagcctggattcctaggacctcagggagaaccagggctc
ccaggactaccgggaaccaagggcgagcgaggggaacttggcccaccaggcaagggagag
cggggcgagcctggacaggccggtcaaaagggggggccaggagaggcagggaacccaggc
cctagaggttcaaagggagagacaggagacaagggagacctgggctctatgggaccatgg
ggaccccctgggcagaaaggtgaccaaggagccactgaaatcattgattacaacgggaac
atccaagaagctttacagaagattaccactattacagtgacgggtccccctgggcctcct
ggactatcaggaccagcgggaatcaagggagatcaaggcatgcctggcctccctggactg
gacggtgaaaggggtttcaaaggttccaaaggagacatgggaatccctggcacatctgga
gataaaggaactgttgggttacctggtttaccaggtgtcaatggattgaaaggagataag
ggtgattctggtctgcctggtcccgaagggccctcaattattggccaacctggagcacct
gggccccatggctccccaggccccatgggaccccatggctttcctggaccaaagggggag
gctgggaatcatggtctgaagggagtacgcggggagtcagggcacaagggagacagagga
cccctgggtctccccggagcctccggcttggacagcaagcctggaattaggggtatggac
gggcctgttggttcctccggtccagccgggccaaagggggacagaggtgagagaggagct
gcaggtgaactcgggccaaggggaccttatggacttcctggagcggctggaacacctggc
cttgatgggttgccaggcttaaggggagagaaaggcgacccgggggaaagaggagaaaag
ggggagaagggaaagaaggggaaaaaagggcctaagggggagaaaggagaacagggtgcc
cctggattagatgcaccctgcccattgggcccagacggactaccaatgcctggttgttgg
caaaagaggtcttcacggatccacctgtacccgaatacctga
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