Oncorhynchus nerka (sockeye salmon): 115138269
Help
Entry
115138269 CDS
T07952
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1-like
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115138269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115138269
Membrane trafficking [BR:
one04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115138269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
Clathrin
TPR_Vps41
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
115138269
NCBI-ProteinID:
XP_029530808
LinkDB
All DBs
Position
LG12:25066692..25073925
Genome browser
AA seq
843 aa
AA seq
DB search
MSLKAFTQVKVYEKLPNPKEKDKFSIHSLECYDRNIYIGTKDSLVQHLILPSSSDTKESS
QSPREGRMKLLGSSSPVTQLRVIPVLNHLLVLWDRSVSALNMFSLEPLPFLKRIQHVSFF
EVCESALSTSSQSVCVELVTASSRSRVVRIHVVGVERWDCVKEVSLPQDPVALAVDDNTL
CVATSDRYFLHDHKSGCTVDLFPHNLSRQNIIVSTAGKGEFLLNGPGSLGMFVMKNGICQ
RPPVQWSEELLAAVVCYPYILALQPQALYVYSMVDQHLKQTVPLLRARGLLSTTEGVYIF
MEREILGLSHVPFEEQIQTLVRYERVEEALGLLGGVQAHLPQVSYKELHKIITCMDGFIQ
FYQGSFSEAKELFIKGELDPREIISLYPEMEPLCETFHSQLVKVNNAKELLALRQEDRTT
FQQYLDFLDDFLRVVRGTKQGVECSEDIDTAQLRMYTEQGDRVDLDALVSSPNSCSIDKC
VPLLELHKRYFTLGLLYQSHGHHIKAIQTWVKITDGQYEDSSCSNVYEHIVRTLSRLKQR
DVVWTFADWALQRNQEVGIQIFTKRHPEDQDTFAQEDVLTFLKKYSLALMLFLEFLVHDL
KSKKEKHHTLLATAYVTHILGALQNGKGTDSDGGMTRDKLQQLLWQSSHYDTMTVHEAIQ
PTVLHTEQAILLGRAGDHYQALQTLVHKERDLQVAGAYCRRAAGWQERELEHTLFLTLLQ
IYMGSNELASAAVDLLNANAAVFDLDTVLQVLPDSWSVQLVSPFLLGSLRGTFHQRRMAG
VERGLAQVELLRHKYTWAQASKRMLKLDKGLVCNTCQKDLTEPEFVCSLRGELVHTDCGS
YTE
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgaaagccttcactcaagtgaaagtctatgaaaaacttcccaaccctaaagaa
aaagacaaattcagcatccatagcctggagtgttatgacagaaatatatacattggaacc
aaagactcattggtccaacaccttatcctacccagcagcagtgacacgaaggaatccagt
caaagtcctcgggaggggaggatgaaactgctaggctcaagcagcccagtcacccaatta
agggtgataccagttctgaatcaccttctggttctgtgggatcgttccgttagcgccctc
aacatgttctccctagaaccccttccttttctgaagcggatccaacacgtgtctttcttt
gaggtgtgtgaatcggcactgtcaacctcatcgcagtctgtgtgtgtggagctggtgaca
gcctctagcaggagcagagtggtccggatccatgttgtgggggtggagagatgggattgt
gttaaagaggtgtctctaccccaggaccctgtggccttagctgtggatgataatactttg
tgtgtggccaccagtgacaggtatttcctccacgaccacaagagtggatgcaccgttgat
ctcttccctcacaacctgagcaggcagaatatcattgtgagcaccgcaggaaaaggggaa
ttccttttaaatgggcccggctccttgggcatgtttgtcatgaagaatggcatatgccag
cggcctccagtgcagtggtctgaggagctgttggcagcggtggtgtgttacccttacatc
ctggccctgcagcctcaggctctctatgtctacagtatggtggatcagcatctcaaacag
actgtgcctctgcttagggccaggggcctactctcaacaacagagggtgtgtacattttt
atggagagagagatcctcggtttgtcccatgtaccatttgaggagcagatccaaaccctg
gtaaggtatgagagagtggaggaggcattgggactgcttggtggagttcaagctcatctt
ccacaggtttcttacaaggagctgcataagatcatcacttgcatggatggattcattcaa
ttctaccaggggtctttttcagaggccaaagaactttttatcaaaggggagttggaccct
agagaaatcatcagcttgtatccagagatggaaccactctgtgagacctttcattcccag
ctggtcaaagtgaacaatgcaaaggagctcttggcactacggcaagaggacaggaccaca
tttcaacagtatctagacttcctggacgatttcctaagggtggttcgaggaacgaagcag
ggagttgagtgcagtgaggatatcgatactgcacaactgagaatgtacacagagcaaggt
gacagagtagacctggatgcacttgtgtcctctcccaattcctgctcaatcgacaaatgt
gtgcctctccttgagctgcacaagagatatttcacacttggattactctaccagagtcat
ggtcaccatatcaaagcaatccagacttgggtgaaaattactgatgggcaatatgaagac
agctcatgttcaaatgtgtatgagcacattgtgagaactctcagtcgactaaaacagaga
gacgttgtttggacgtttgcagactgggctctccaaagaaaccaggaggttggaatacag
attttcacaaaaagacatccagaagaccaagacacatttgcacaggaggatgtcctcact
tttttaaagaagtactctctagctttgatgttgttcctggaatttctggtccatgatttg
aaaagcaagaaggagaagcatcatacccttttggccaccgcatatgtcacccatatactc
ggagccttacagaatggaaagggtacggattcagatggaggaatgaccagagataaactg
caacagttgctgtggcagtcttcccactatgacaccatgacagtacatgaggccatccag
ccgacagtcctgcacaccgagcaggccatcctgctcgggagagctggtgaccactatcag
gccctacagaccttggtccacaaagagagagacctccaggttgcaggggcctactgcagg
agggctgctgggtggcaggaaagggaactggaacacacccttttcctcaccctgctccag
atctacatgggctccaatgagctagcgagtgcggccgtggacctgttgaatgccaacgct
gctgtttttgacctggatacagtcctccaggttctgccggattcctggtctgttcagctg
gtctccccgttcctgttggggtcccttcgagggactttccatcaaagacgaatggcaggg
gtagagaggggcctggcccaggtagaactccttagacacaagtacacttgggcccaagcc
tcaaaaagaatgctgaaattggataagggtctggtgtgcaatacctgccagaaggatctc
acagagccagagtttgtgtgtagtcttaggggtgagctggttcacactgactgtggaagc
tacacagaatag
DBGET
integrated database retrieval system
