Oncorhynchus nerka (sockeye salmon): 115138416
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Entry
115138416 CDS
T07952
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115138416
03015 mRNA surveillance pathway
115138416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115138416
03041 Spliceosome [BR:
one03041
]
115138416
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115138416
Spliceosome [BR:
one03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
115138416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
115138416
NCBI-ProteinID:
XP_029531103
LinkDB
All DBs
Position
LG12:34976591..34999381
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AA seq
870 aa
AA seq
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MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVVKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDDEKKEKENRERESPRRRKSRSQSPRRRSPVKR
ERKRSHSRSPRRKPSPSSSPPPPAPAVTLVSVTLPQSTEEPQPEPDTSESTIPEPVIQEA
SSTSDVVKPDTVVVVPDSVTEVKEPSPDKAPKKERPKPREREKDSRRDRPHHRSRSHSRS
RRRPRSRSRSYSPRRRPSPRRRLSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSPSSSGS
SSTSHSPHKKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPSGKTQRSASPRARKG
RASASPSRSAGSKKKPGTRNDSPSPVPKPRQSEASESEGATADSVQQRRQYRRQNRETSS
EAGSSSSSEGEGSKRPGRGPVARNGDVRRRRSHSPSSPRRRHRDGSPRKRRSPSPGGRRS
PPRRRRSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSGSPSPKRL
SPVPKRRPSRSPKRRSPPPQKRRTPPSSTSPPRHRRSPMLPSNRPGRDTRSPPLAHSNRL
SPSPANRGRTSPQGRFDTSPPGQRRQVSPSHGNRAIRRVSRTPEPRKNQRGSQSPQPMRR
VSSRSPSGSPKPGALKRPASGSPSPGHSASGSPPAPPAKKASSGSGSPSPNKNSDTEPGG
KKNKKKKKEKKHKKEKKHKKHKKHKKEKCDVPVAAGDDQENQGMEGDAASNPKKESDSEV
EECLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggtttcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtctggaaaagaaggtggatatg
accaaggtgaacctggaggtcgtcaaaccttggatcactcagcgagtgacagagatcctg
gggttcgaggatgacgtcgtcatagaatttatatttaaccagctggaagaaaagcacccg
gacagtaagatgatgcagatcaacctgactggcttcctgaatgggaagaatgcccgagag
ttcatgagggacctgtggcctctgctgctcagcgctcaggacaacatcgccggtatcccc
tccgccttcctagagcagaagaaagaggagatcaaacagagacagattgagcaagagaag
ctcgcttctctgaagaagattgatgatgagaagaaggaaaaggaaaacagagaaagggag
agccccagacggaggaagtcaaggtcacagtctccacggcgacgatctccagtgaagagg
gagaggaagcgcagtcactcccgttcaccgaggcgtaagccaagtcccagcagctcccct
ccaccaccagccccagctgtcacccttgtcagtgttaccctgccccagagcactgaggag
ccccagcctgagccagacacctcagagagcaccatacctgagccagtcattcaggaggcc
tcctccaccagtgatgtggtaaagccggacactgtggttgtggtacctgactctgtgacg
gaggtcaaagaaccctccccagataaggctcctaaaaaggagaggcccaagcccagggaa
agggagaaggacagcaggagagacaggccccaccaccgctctcgctcccattcccgctcc
cgcagacgacccagatcacgctccaggtcttactccccccggcggaggccgagccccagg
agacggttgtcccctcggcgtaggagcccccccagacgtggccccccaggccccagacac
aggcgcagtcgctcccctgtccgcagacggcgctctcgctccccatcatcctctgggagc
agctccacgtctcactcacctcataagaaggcaatgaagagaacgtcaaccacaccaccc
agaaaacagccccgcggccatgcagctgatccctccctcagcccctccaggagaagagcc
cccaatggcagcccctctgggaagacacaacgctctgcctccccgcgggccagaaagggc
cgggcctcagcctccccatccagatcagcagggtcaaagaagaaaccaggaacgaggaac
gattcaccgtcccctgttccgaaacccaggcagtctgaggcatcagagtcagagggggct
acagccgattctgtgcagcagcgacgtcagtatcgcaggcagaatcgggaaacgtcttca
gaggctggatcatcatcatcctcagaaggtgaggggtccaagaggccgggcagggggcca
gtggcgaggaacggggatgtcaggcggcgacgcagtcactctccctcctcccccaggaga
cgacaccgggacggctcccccagaaaaagacgctctccatcccccggaggacgcagatct
cccccaaggcgtcgcagatctccctctcctcctcctaggcgcaggtctccctctccacca
cctcgcagacgctccccctcccccagacggtactctccacccatccagcggcgatacagc
cccactcctttgggcccacagaaaagaaggctgtcagggtctccctctcccaaacgccta
tccccggtgcccaagcgccgtccctccaggtcccctaagcgcaggagtccccctccccaa
aagagacgcacacctccctcatccacctctccccccagacacaggagaagccccatgctc
ccatccaaccgaccaggccgggacactcgctcacccccccttgctcacagtaaccgcctg
tccccttcccctgccaaccgtggccgaaccagtcctcaggggcgctttgacacctctcca
cctggacagaggcgccaggtgtccccctcacacggcaacagggcaatccgcagggtgtcc
cggacaccagagccccgcaagaaccagagaggctctcagagcccccagccgatgaggaga
gtgtcatcaaggtcaccgtctggttcccctaaaccaggagccctgaaacggccagcttca
ggctccccttctccaggccactcagccagtggatccccacctgcacccccggctaaaaag
gccagcagcggctctggcagcccttctccaaacaagaattctgacactgagcctggagga
aagaaaaacaagaagaagaagaaggaaaagaaacacaagaaggagaagaagcataagaag
cacaagaaacacaagaaggagaagtgtgatgtgccggttgctgctggggatgaccaggag
aaccaggggatggagggcgacgcagcctccaacccaaaaaaggaatcagacagtgaagta
gaagaatgtctggacgacctggagaagcacctgagagagaaggcactgcgttccatgagg
aaagctggaaagctgtcccctccactgtcctga
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