Oncorhynchus nerka (sockeye salmon): 115138573
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Entry
115138573 CDS
T07952
Symbol
hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04137
Mitophagy - animal
one04140
Autophagy - animal
one04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115138573 (hif1a)
04137 Mitophagy - animal
115138573 (hif1a)
04148 Efferocytosis
115138573 (hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115138573 (hif1a)
Transcription factors [BR:
one03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
115138573 (hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
HIF-1a_CTAD
PAS_11
HIF-1
PAS
PAS_4
PAS_9
HLH
DUF7997
Motif
Other DBs
NCBI-GeneID:
115138573
NCBI-ProteinID:
XP_029531383
LinkDB
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Position
LG12:41544923..41581255
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AA seq
758 aa
AA seq
DB search
MNTVVPEKKSRVSSERRKEKSRDAARYRRGKESEVFYELAQELPLPHGVTSNLDKASIMR
LAISYLHMRKLLSTEDKAVEKEQEESEMDSQLNGSYLKALEGFLMVLSKDGDMIYLSENV
NKCLGLAQFDLTGLSVFEYTHPCDHEELREILVHRTGTSKKSKGPNTERSFFLRMKCTLT
SRGRTVNVKSSTWKVLHCSGHVRVHEAPTEQSPIGHKEPPVSYLVLVCDPIPHPSNIEAP
LDTKTFLSRHTLDMKFTYCDERITELMGYDPEDLINRSVYEYYHALDADYLTKTHHNLFV
KGQVSTGQYRMLAKIGGFVWVETQATVIYNNKNSQPQCVVSVNFVLSGIEEEKMVLSLEQ
TEDMRSVKKELVEEEEDEGSEAEVSPVLLKEEKVDVIKLFTQAMEAQPLASLYDRLKEEP
EALTLLAPAAGDTIISLDFGSPDSDILLKEVPLYNDVMLPSTSDKLALPHSMLPPNEQPL
IPSASVDTKAGPDSFSTPGSHSSTEPDSPLNFCFPMDSDISAALKLDLVERLFAIDTEPK
TPFTSQGMEDLDLEMLAPYIPMDDDFQLRTLSPEEPPLCGPAQPPESSPLCSPLHLTQDV
HSYTDSPFSAPRSRTASPAPELAASPCPASLLTMRAPQMDREMSLRTLATQNSQRKRKLS
LSQAVGIVNGALYQDPPGPGKQLKVSELGSSEAPSNKTILLLPTDLASCLLGISSEGSGS
PFTLPQLTRYDCEVNAPVVGRQHLLQGEDLLCALDQVI
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagttgtcccagaaaagaaaagcagggtgagctcggagcggaggaaggagaag
tcccgggatgcagcgcgataccggagggggaaagagtcggaggtgttctacgagctggcc
caggagctgcccctgccccacggtgtcacctccaacctagacaaggcttctatcatgaga
ctggctatcagctacctgcacatgaggaaactgctgagcacagaagataaggcagtagag
aaggagcaggaggagagtgagatggactcccagctgaatggctcctatctgaaggctttg
gagggcttcctcatggtgctgtctaaagacggggacatgatttatctctctgaaaatgtc
aacaagtgcttgggtctggcacagtttgacctgacaggacttagtgtgtttgagtacaca
cacccctgtgaccacgaggagctaagggagatcctggtacacagaacagggacctctaaa
aagtccaagggaccaaacacagagcgcagcttcttcctgcggatgaaatgtaccctcacc
agcagggggcgcactgtcaatgtcaaatcatccacttggaaggttctccactgctcaggc
catgtgcgagtccatgaagccccaactgagcagagccccattgggcacaaggagccgccc
gtctcctacctggtgctagtctgtgaccccatcccccacccctccaacatcgaggcgcca
ttggacaccaagaccttcctcagccgccacacactggacatgaagttcacctattgtgac
gagaggatcactgagctgatgggctatgatccagaggacctgataaatcgctctgtgtat
gagtactaccatgccttggacgcagactacctcactaagacccatcacaacttgtttgtt
aagggccaggtgagcacaggccagtaccgcatgctggctaagataggtggctttgtgtgg
gtggagactcaggccactgttatctacaacaacaagaactcccagccccagtgtgttgtc
tctgtcaactttgtgctcagtggcattgaggaggagaagatggtgctgtctctagagcag
actgaggacatgaggtctgtaaagaaggagctggtggaggaggaagaggacgagggctca
gaggcagaggtgtcccctgtgctcctgaaggaggagaaggtggatgtgattaagctgttc
acccaggcaatggaggcccagccgctggcgagcctgtatgacagattgaaggaggaacca
gaggccctcacccttctggccccggccgcaggggacaccatcatctccctggacttcggc
agccccgactctgacatcctgctgaaggaggtgcctctctacaacgatgtgatgctgccc
tccaccagtgacaagctggccctgcctcactctatgctgccccccaatgagcagcccctg
atccccagtgcctcagtggacaccaaggcaggtccagactccttcagcaccccaggcagc
cacagctcaactgagcctgacagcccgctgaacttctgttttccaatggactctgacatc
agtgctgcgctgaaactggacctggtggaaagactgtttgccatcgacacagaacccaag
acacctttcacctcacagggcatggaggatctggacctggagatgttggctccatacatc
cccatggatgatgacttccagctgcgcaccctgtccccagaggagcccccattgtgtggc
ccagcccagcccccggagagctctcctctgtgctctcctctgcacctcacccaggatgtc
cacagctacacggattccccctttagtgccccaagaagccggacagcttccccagccccg
gagctggcagctagcccttgccctgcctccttactcaccatgagggcgcctcagatggac
agagagatgtccctcaggacactggccacccagaactcacagcgcaagagaaagttgtct
ctgtctcaggctgtcggaatagtaaatggggcattgtaccaggaccctcctgggccaggt
aaacagctcaaggtgtctgagctgggcagctctgaggctccctccaacaagaccatactg
ctcctacctacagacctggcaagctgcctgcttggcatctcctcggagggcagcggctca
cccttcacccttccacagctgacccggtatgactgtgaggttaatgcccccgtggtgggt
cgccagcacctgctgcagggcgaggatctgctgtgtgccctggaccaagtcatctga
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