Oncorhynchus nerka (sockeye salmon): 115138653
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Entry
115138653 CDS
T07952
Symbol
nrde2
Name
(RefSeq) protein NRDE2 homolog isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115138653 (nrde2)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115138653 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
GAGA_bind
Motif
Other DBs
NCBI-GeneID:
115138653
NCBI-ProteinID:
XP_029531604
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All DBs
Position
LG12:complement(46614927..46631300)
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AA seq
1194 aa
AA seq
DB search
MTSYSRDCLHAEAINMALFPAFAGLSNTKAEIAPKELEWLNNQSFRTDDALSLHQRATEK
ANETQSAETSRHVIPEREDKNDVQSNKKKKKKEEKKKKKKKKKHKKKSGEPSPASSGSDS
DTIYPSDLLKKAESTPPSEAVQVEGSFVWLDDLQTPTDQPFCVDRRADRANWEYKSLYRG
DIARYKRKGSSSLGLNLRSQAVSWAESGPEKKRVDRRQRPNRYFSPTVRQLLMSDGKPTL
PRPPPEDTTTTTLSFIPVPSCLEGEAEGGGSAKGQGSWVNPLGVYDSSTSLWLQGKGKVE
HGKAEEQPSTPRDNAAVMLAERVEDFNRRLRETPTDTHTWLQFVLFQDEVAGAPGVFADI
SENESERRKRSVRATLEKKVAILDRAVENNPSCVELKLERLRLCRELWEPAALLKEWKKL
VFLHPNSAPLWRKYLLFMQSHFSTFSVSKVNTVYGKCLSTLAAVQDGSMVSHQMLPGTDE
HMLAIFLQQCHFLRQAGHSEKAVCLFQGLLDFTFFKPDTVKDLPTRQQVEFFEPFWDSGE
PRVGERGASGWRAWMTQQERGGWLQPSEQDDGDEEDQEELEVKDKTWPKWRIWLDVETSR
EAIHWLPWRPDKTKGQSVEDCEDPDRQVLFDDIGPSMIRLVRPDLQLCLLLSFLHFLGLP
ADTSCYSAPSCSLLLDDQALLGDVHHPDSPLTSYALPVPGVSPVGHMTSLQGARRGVGLC
KQGEEFVDNVFQMVLPLFSAQERAVLSLHWIQYEKLKVLRCVRGRNKKRVKSQGKRSKRL
AKRLLKEPENRGRLSLWREYAHLEWLLGNLDEAHKVFDTALGLGVAGGLADPALCDLCLL
YAQLEVEEAWRRDTGGAGTTVTTAMSSPAVYILTKLAEGSSYAPFLGQLAPVAVLKARKA
YEQAVVSSLPGQEEGAAGQGQSKSRQVKGLVGCYALFQYLTVGVDAADAVYNLARKRLEQ
HSSMSAQESASSEVMCDIQTLSSVSECEALAVQQVALLRYHTSTNVYPLSHIRLALTSAL
AHFASSTSLWQLYVQVENRYHSAGRARRFFHSVTKASTSVVPRLFAISAEQQRKQLVDSV
QRSDCCGDTVSSLPENGLSNRIRSLFENAIATEHGVHCPLLWRMYMNFLVSEGKVEKGRG
IFYKALQDVPWAKGLYMDAVQLFPEHVQEFLDLMTEKELRLRVPMEEVDILLED
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcatattcacgcgactgtttacacgcagaggctatcaacatggcactatttcca
gcttttgcaggattatcaaatacaaaagctgagattgcacctaaagaactagaatggctg
aacaatcaaagtttccgcactgatgacgctctctctcttcaccaacgagccactgagaaa
gccaacgaaacacaatcggcagaaacaagcagacacgttataccagagagggaggataag
aatgatgtccaatccaacaagaagaaaaagaagaaggaggagaagaagaagaagaaaaaa
aagaagaagcacaagaagaagagtggagaaccctctccagcaagcagtggctcagattcg
gatactatctaccccagtgacctcctaaaaaaggctgagagcactcctcccagtgaggcg
gttcaggtggaggggtcttttgtgtggttggatgacctccagacccccaccgatcagccc
ttctgcgtggacaggagagcagaccgtgccaactgggagtacaaatcactttacagagga
gatatcgctaggtacaaaaggaaaggctcttcctctctgggtttgaacctgcggtctcag
gccgtgagctgggctgagtctggcccagagaagaagagagtggacaggagacagagaccc
aaccgctacttctcccccaccgtccgccagctgctgatgtctgatggcaaacccacgttg
cccagacctccaccagaggacaccacaaccaccactttatccttcatccctgtgccctcc
tgtctggaaggtgaggcagaggggggtggctctgccaaaggccagggctcctgggtcaac
cccctgggggtgtatgactcctccacgtccctgtggctccaggggaaggggaaggtggag
catggcaaggcagaggaacaaccttctactcccagggacaatgctgccgtcatgctggct
gaacgggtggaggacttcaataggaggctgagggaaacccccacagacacacacacctgg
cttcagtttgtcctcttccaggacgaggtagctggggcgcctggggtgtttgctgacatc
tctgagaacgagagcgagcggcggaagaggtcagtgcgcgccacgctggagaagaaggta
gccattttggatcgagcagtggagaataatccgagctgcgtggaactgaagctggagcga
ctgcggctctgtagggagctgtgggagccggcagccctgctgaaggagtggaaaaagctg
gtgttcctgcaccccaacagtgcccccctgtggaggaagtacctgctgttcatgcagagc
cacttcagtaccttctccgtgtcaaaggtcaacacggtatacgggaagtgtctgagcacg
ctggcggcggtgcaggatgggagcatggtttctcaccagatgctgccgggcactgatgaa
cacatgctggccatcttcctccagcagtgtcatttcctcaggcaggctggccactcagag
aaagctgtgtgtctgttccagggcctactggacttcaccttcttcaagccagacactgtc
aaggacctacccaccagacaacaggtggagttctttgagccattctgggacagtggggag
ccccgtgtcggggagagaggggccagtggatggagagcctggatgacccagcaggagaga
gggggctggctccaacccagtgaacaagatgatggagatgaagaagatcaggaggaattg
gaggtgaaggataaaacctggcccaagtggaggatctggttggatgtggagacgtcacgc
gaggccatccattggctgccatggaggccggacaaaaccaagggccaatcggtggaggac
tgtgaggacccggaccgacaggtgctgtttgatgacattgggccgtctatgatccggctg
gtccgcccagacctccagctatgtcttcttctgtccttcctgcacttcctgggtctgcct
gctgacacttcctgttacagcgccccctcctgtagcctgctgctggatgatcaggctcta
ctgggggatgttcaccaccctgactcaccactgacctcttatgccctccctgttcctggg
gtcagccccgtgggtcacatgacctctctgcagggtgccaggaggggggtggggctgtgt
aagcagggggaggagtttgtagacaacgtgttccagatggttctgcctctgttctctgct
caggagagagctgtcctctcactacactggatccagtatgagaagctcaaggtgctgagg
tgcgtgcgcggcaggaacaagaagcgtgtgaaatcccaggggaagaggagcaagcgcctg
gccaagcgcctgctgaaggagccagagaaccggggccgcctcagcctgtggagggagtac
gcccacctggagtggctgctagggaatttggacgaggcccacaaggtgttcgacacagcc
ctgggactgggcgtggcaggagggctggcagaccctgccctgtgtgacctctgcctgctc
tacgcccagctggaggtggaggaggcctggcgaagggatacgggcggggcagggacgact
gttacgaccgccatgtcttcaccagcggtctatatcctcaccaagctagcagagggtagt
tcgtatgcccccttcctgggacagttggctccagtggccgtgctgaaggccaggaaggcc
tatgagcaggctgtggtgagctccctgcctgggcaggaggagggggccgcggggcagggg
caatccaagtccaggcaggtcaaaggtctggtggggtgttacgccctattccagtacctg
actgtgggggttgatgctgctgatgctgtctacaacctggccagaaagaggctggagcaa
cactccagtatgtcagcccaggagtcagctagcagtgaagttatgtgtgacatacagaca
ctgagctctgtctcagagtgtgaggccctggctgtccagcaggtggcgctactgcgctac
cacaccagcaccaacgtgtacccacttagccatatcagactggcgctgacctcggccctg
gcccactttgcctccagcacttctctgtggcagttgtatgtgcaggtggagaaccgctac
catagcgctggcagggctcgccgcttcttccacagcgtgaccaaggctagtaccagtgtc
gtgccacgcctgttcgccatcagcgcagagcagcaaaggaagcagctagtggactctgtt
cagaggtctgattgctgtggtgacaccgtctccagcctgccagagaacggcctgagcaac
cgtatccgctcgctgtttgagaatgccatagcaacagagcacggggtccactgtccgttg
ctgtggaggatgtacatgaacttcctggtgtcagaggggaaggtggagaagggaagaggt
atcttctacaaggctctacaggacgtcccatgggcaaagggtttatacatggacgcggtg
caactcttccctgagcacgtgcaggagttcctggacctgatgaccgagaaggagctcaga
ctgagggttcccatggaggaggtggacatactgctggaggactga
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