Oncorhynchus nerka (sockeye salmon): 115138706
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Entry
115138706 CDS
T07952
Name
(RefSeq) probable E3 ubiquitin-protein ligase IRF2BPL
KO
K22383
interferon regulatory factor 2-binding protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115138706
04121 Ubiquitin system [BR:
one04121
]
115138706
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
115138706
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Atypical E3
115138706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-2BP1_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
115138706
NCBI-ProteinID:
XP_029531697
LinkDB
All DBs
Position
LG12:49637076..49640047
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AA seq
669 aa
AA seq
DB search
MSSAHVSSSRRQSCYLCDLPRMPWAMIWDFTEAVCRGCVNYEGADRIEFVIETARHLKRA
HGFQEGRSPGPPPPPTVKTQAAISAKETVQINHVDGPSKQQQQQGMDRYSLNAERPRFDY
SSIGAHASRLPNGMSGPNGFPKPDDGPPELNRQSPNSRRSHGLVAVPGQLNVPPNLLPQT
MLNGPSSATAIASHSLSSRPPPSIVGPSLSQSSQSMSEQGKRPGSVSSTDQERDLKEKQR
NAEALAELSESLRNRNEDWANKPKIVRDTLLTLSNSSPFDVRFKKDHSLVGRVFAFDAVS
KPGMDYELKIFIEYPSGSGNVFSSASGVAKQMYQDCMKDFGRGLSSGFKYLEYEKKHGSG
DWRLLGDLLPESVRFFKEGLGVEMLPQPYIDASCPLLPTALVNIPRGLPSASAPRIGVRK
RKASPEPDSAESALKLSEQEQQRQQWMASQSEALKLTMASGSFGTSHGAPPPLGPGHSVH
SSRATPPESTPQNGQSPMAALMSVADTLGNAHSPKDNNSVHSTTSTRHNSSSPVSPASVS
GQRRLASRNGELNLSGGPSQSNAHSGMDQVHAQNIPDSPMANNGPLCCTICHERLEDTHF
VQCPSVPNHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWAFMQGEIATILAGD
VKVKKERDP
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgcacacgtatcctcatctcggagacagtcatgttacctgtgcgatttaccc
cgtatgccgtgggctatgatttgggattttacggaggcagtgtgcaggggttgtgttaat
tatgaaggtgcagatcgaatcgagtttgttatcgaaactgcacgccacctcaaacgtgct
catggtttccaagaggggagatcccccggtccaccgccgccgcccacagtcaaaacccag
gcggcaatatcagccaaggagacggtgcaaatcaaccatgtggacggaccatctaaacaa
caacaacaacaggggatggaccgctactctctgaacgcagagagacctcgctttgactac
tccagtattggcgcccatgccagcagacttccgaatggaatgagcggtccaaatgggttc
ccaaaaccggacgatggtcccccagagttgaaccgacagagcccaaactcccgtcggagc
catggtctagttgcggtcccaggacaactgaatgtcccccccaaccttctcccacagacc
atgttgaatggaccctcctcggcaacagccatagcctcgcatagcctgtctagccgcccc
ccaccatccattgtgggaccctctttgtcccagtcctctcagtccatgtcagaacaaggt
aaacgaccaggttctgtgtcaagcactgaccaagagagagatctgaaagaaaaacagcgt
aatgcggaggctttggctgagcttagtgaaagtttaagaaatagaaacgaagactgggca
aacaaaccgaaaatagtaagggacactttgcttactctttcaaacagctccccgtttgat
gtgagatttaaaaaggatcattcactcgtgggcagggtgtttgctttcgatgcagtgtca
aagcctggcatggactatgaattgaaaatatttatcgagtacccaagtggatctggtaat
gtattttccagcgcatcgggggtggccaaacaaatgtatcaggactgcatgaaggacttt
ggcagagggctctcctcgggttttaaatatttggagtatgagaaaaagcatggttctggg
gactggcgactcctgggtgatttgttgcccgagtcggtccgattctttaaagaggggctg
ggggttgaaatgttgccacagccctacattgatgccagctgtccattgctgcccactgct
ttggtcaacatccctcgaggcttgccatctgcgagtgccccgaggattggcgtgcgtaag
cgtaaagcctccccagaacctgactccgcagagagcgcgctgaaactatctgaacaagaa
caacagaggcagcagtggatggccagccagagcgaggcgttaaaactgacgatggcatcc
ggatcattcggtacctcacacggggcacccccaccgctcggccctggtcattctgttcac
tcaagccgcgctacgccccctgaatcaacgccccagaatggacagtctccaatggccgcg
ctcatgtctgtcgcggacacgttgggcaatgcgcactccccgaaggacaacaactcagtt
cactccaccacatccaccaggcataacagcagcagcccggtctcgcccgcctctgtttcg
gggcagaggcgtttggcttcccgtaacggagagctcaatctatctgggggtccctcccag
tccaatgcgcattctggcatggatcaggtccacgcgcaaaacattccagattcgcccatg
gctaacaacggacctctgtgttgtaccatttgccacgaacgtttagaggatacccatttc
gttcagtgtccgtcagttcccaaccataaattctgtttcccttgttcccgagagagcatc
aaagcgcagggagcaactggcgaggtgtattgtcctagcggagagaaatgccccctggta
ggttctaatgtgccttgggcgttcatgcaaggtgagatagcaacaatattagctggggac
gttaaggtaaaaaaggagagggacccatag
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