Oncorhynchus nerka (sockeye salmon): 115138914
Help
Entry
115138914 CDS
T07952
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5-like isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115138914
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
115138914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
HDA2-3
PHD-1st_NSD
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
115138914
NCBI-ProteinID:
XP_029531959
LinkDB
All DBs
Position
LG2:complement(36628734..36664985)
Genome browser
AA seq
2054 aa
AA seq
DB search
MPGSLSNEDEGQEDMDFEDEIPDEDEDGQRNTVPLTPLDSFFTDNDSLKQQKKKKPKKMK
EGKMPKVKKRKKEGGGGGGVGGGGSDLKEQIPEREDDRPLQGPEIGSESESSTYAPTTKK
KKKPKDKKEKKPKRKKREEEEEDDDDDDDDEDDENNKEPKSSSQLMQEWGLEDVQYGFTE
EDYTTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGTSATAVAAA
VAAAVETVTVASPTSVKEITTLSSSQPGQIRKAKTKEGKGPGVRRKTKTVKEVKKKSKGR
KTKSKKKASSSEEDFGLEESDFDDVSIHSASVRSDTSGNAKKKARKGRKKRKREDGDGYE
TDHQDYCEVCQQGGEIILCDTCPKAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDD
DDEEEEVAVEEEDDHLEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC
LCPPPKGKVQRILHWIWGDPPLPTEVPPVPDGETVDPLVKPPLKGHPERELFVKWAGLSY
WHCSWVSELQLELYHAVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRKSKDPEYAAMEE
RFYRYGIKPEWMVIHRILNHSYDKDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYHNAKHS
YWDHREQMIGDDQRPLVVRKGKKGKEEEKRREREIPPNAPIIDPTIKFEHQPWYINATGG
TLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPL
STIINWEREFEMWAPDFYVVTYTGDKESRAVIRENEFTFEDIAVKTGRKVFRMKKDTAIK
FHVLLTSYELITIDQTILGSINWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTP
LQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFK
NMPSKTELIVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYL
FPVAAVEAPVLPNGSYDGNQLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLED
FLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY
DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLG
SKTGSMSKQELDDILKFGTEELFKDEMEAAARAMGSHQKLWDIKDGDEGSVIHYDDNAIS
KLLDRSQNATEDTEIQNMNEYLSSFKVAQYVVKDEDAEEEPQREIIKQEENVDPDYWEKL
LRHHYEQQQEDLARNLGKGKRIRKQVNYNDTSQEDQEWQDDLSDNHSEYSVGSEDEDEDF
EERPEGGRRHSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQD
AFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIG
VMSLVRKKVQEFEHVNGKYSTPDLIPIGLELKKLTESLSSDPNTPVPASPAATPQPPGSP
VPPEKLDSISGPAEDKEPTEQECKKLSELETHVSTESSSQVEKTDIAPDSDETEKGSTED
KPVSSEESSEMTDIPSALIEPSITPKEPPSIQTELLSNQSSPKAEPCRETEKSLEKGDCD
PAPANPEEKELNPVVSDEAKSEDLLVPEGRLNGEKEAQEEMEEVRRELLEKNGFKMRFMF
NIADGGFTELHTLWQNEERAAVSSGKMYDIWHRRHDYWLLAGIVTHGYARWQDIQNDPRY
AIHNEPFKTEMHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPSHPAMAL
NTRFAEVECLAESHQHLSKESLAGNKPANAVLHKGLSSPSVYTAAGLKHCLQTQDLVLNQ
LEELLSDMKADVTRLPNMLSRIPPVSSRLQMSERSILSRLTSRGNEPPPQQPFGQGSFAC
SQMYSTGFGGSFRGPAGEAMVNYSQMPLGPYVSVSNGPPPPSSHLDKKSCDHLRDVTTPD
LKSGKPSDVICIED
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtcgttaagcaatgaagacgagggacaagaggacatggattttgaagacgaa
ataccagatgaggatgaggatggtcagcgtaacactgtcccgctcacacctctggacagc
tttttcactgacaacgactccctcaaacaacagaagaagaagaaacccaaaaagatgaag
gagggcaagatgcccaaagtcaagaagaggaaaaaggagggaggaggaggtggaggagta
ggaggtggtggcagtgacttgaaggagcagatccctgagcgggaggatgaccgtccactg
cagggtccagagattggctcagagagcgagagcagcacctacgcccctaccacaaagaag
aagaagaaacctaaggataagaaagagaagaaacccaaacggaagaagagagaagaggag
gaggaggatgacgatgatgatgatgatgacgaagatgatgaaaataataaggagcccaag
tcgtccagtcagctgatgcaggagtggggtctggaggatgtgcagtatggcttcacagag
gaggactatacaaccctcaccaactacaaggccttcagccagttcctcaggccacttatt
gccaagaagaaccctaagatccccatgtcaaagatgatgacagtgttaggggccaagtgg
cgagagttcagcgctaacaaccccttcaaaggcacctctgcaactgctgtggctgctgcg
gtggctgctgccgtggaaacggtcaccgttgcctcacccacctctgtcaaagagatcact
acactgtcaagctctcagcctgggcaaatcagaaaagccaaaaccaaagagggaaagggg
cctggggttcgacggaaaacaaagactgtaaaggaggtaaagaaaaaaagtaaagggagg
aaaaccaaatcaaagaagaaagcatcctcgagtgaggaggactttgggctggaggagtcg
gactttgatgatgtcagcatccacagtgcctcggtgcgctctgatacctcagggaatgcc
aagaagaaagcccggaagggtcggaaaaaaaggaaaagagaggatggggatggctatgag
acagaccaccaggactactgtgaggtgtgccagcagggaggggagatcatcctgtgtgac
acctgtcccaaagcctatcacctggtgtgtctggaccctgagctggagaaagctcccgag
ggcaagtggagctgcccccactgtgagaaggagggcatccagtgggaggccaaagatgat
gacgatgaggaagaggaggttgcggttgaggaagaggacgaccacctggagttctgcaga
gtgtgtaaagacggaggggagctgctgtgctgtgacacctgcccctcctcctaccatatc
cactgcctcaaccctccactgcctgagatacccaatggggagtggctgtgcccacgctgc
ttgtgcccacctccaaaggggaaggtacagagaattctccactggatttggggggacccc
cccttaccaactgaggtgccccctgtccccgatggagagactgtggacccgctggtaaag
ccccccctgaagggccacccggagagggagctgtttgtcaagtgggctggtctctcctac
tggcactgctcctgggtcagtgaactgcagttggagctgtaccacgcggtgatgtaccgt
aactaccagaggaagaacgacatggacgagccccctccgtacgactacggctctggggag
gaggagctgaacaacgagaagaggaagagtaaagacccagagtacgctgccatggaggag
agattctaccgctacggcatcaagccagagtggatggtcatccacaggatcctcaaccac
agttatgataaggatggggatgtgcactacctgatcaagtggagagacctgccctatgac
cagtgcacctgggaggtggatgactttgacgtccctgagtatcacaacgccaaacactcc
tactgggaccacagggagcagatgattggtgacgaccagcgccctttagtggtgagaaag
ggaaagaagggcaaagaggaggagaagaggagggagagagaaatccctcctaacgctcca
atcatagatcctaccatcaagtttgaacatcaaccgtggtacatcaatgccactggggga
accctacacccgtaccagctggaggggttgaactggctgcggttctcctgggcacagggc
acagacactatcctggcagacgagatgggcctgggcaagactgtccagaccatcgtgttc
ctctactcactctacaaggagggtcactccaaagggccatacctggtcagtgcccccctg
tccaccatcatcaactgggagagggagtttgagatgtgggccccagacttctacgtggtg
acctacactggggacaaagaaagccgggcggtcatccgggagaacgagttcaccttcgag
gacattgcggtcaaaacaggccgcaaggtcttccgtatgaagaaagacacggccatcaag
ttccatgtgttgctgacgtcttatgagctaatcaccatcgatcagaccattcttggctcc
attaactgggcctgtctagtggtggacgaggcccacagactgaagaacaaccagtcaaag
tttttcagaattctcaatgggtataagatctactataagctgctactgactggcactcca
ttgcagaacaacctggaggagctgtttcacctgctcaacttcctcaccccagagagattc
aataacctggaggggttcctggaggagtttgcagacatctccaaggaggaccagatcaag
aagctgcatgatctgctgggcccacacatgctcaggagactgaaggctgacgtcttcaag
aacatgccttccaagacagagctcattgtacgagtggagctcagccccatgcagaagaag
tactacaagtttatcctgacgcggaactttgaggcgctcaactccaagggcgggggcaac
caggtgtccctgctcaacatcatgatggacctgaagaagtgctgcaaccacccctatctg
ttccccgtggcagctgtggaggcaccagtgttacccaatggctcttatgatgggaaccag
ctggtcaagtcctcaggcaaactcaccctgctccagaagatgctgaagaaactcaaagat
gaaggacacagagttctcatcttctcccagatgactaagatgctggatctgcttgaggac
tttctggaatacgagggctacaaatatgaacgcattgatggaggcatcacagggggacta
cgacaggaggctatcgaccgcttcaacgcaccgggtgctcagcagttctgcttcctcctc
tccacccgagctggaggcttgggcatcaacttggccacggcagacaccgtcatcatctac
gactcagactggaaccctcacaacgatatccaggcattcagcagggcccaccgtataggt
cagaataagaaggtgatgatctatcgctttgtgacgcgagctagcgtggaggagcgcatc
acccaggtggccaagaggaagatgatgctgacccacctggtggtgaggcccggcctgggc
tccaagaccggctccatgtccaaacaggagctggacgacatcctcaagttcggcaccgag
gagctcttcaaggacgagatggaggcagctgcacgggccatgggttcgcatcaaaaactc
tgggacataaaggatggagatgagggcagtgtcattcactatgatgacaatgccatctcc
aagctgctggaccgtagccagaatgccacggaggacactgagatccagaacatgaacgaa
tacctcagctccttcaaggtggcccagtatgttgtcaaagacgaggacgcagaggaggag
ccccagcgggagatcattaagcaggaggagaatgtggatccagactactgggagaagctg
ctgaggcaccactatgagcagcagcaggaggacctggcccgcaacctgggcaaaggcaaa
cgcatccgcaagcaggtcaactacaacgacacgtctcaggaggaccaagagtggcaggat
gatctttcagacaatcattccgagtactccgtggggtccgaggacgaggacgaagatttc
gaggagaggccggaaggtgggcgcaggcattctcgcaggcagctgaagagtgacagggac
aaacctctgccacccctgctggcacgcgtagggggcaacatcgaggtgctggggttcaac
gcccgtcagcggaaggccttcctcaacgctatcatgcgctggggcatgcctcctcaggac
gccttcaactctcactggctggtcagagacctgagagggaaaagtgagaaagagttcagg
gcctatgtgtccctgttcatgagacatctttgtgagcccggggcagacggggcggagacc
tttgcagatggggttccacgagaagggctgtcccgtcagcatgtcctcaccaggattggg
gttatgtctctggtcaggaaaaaggtccaggagtttgagcatgtcaatgggaaatacagc
actccagacctgatccctattggactggagctgaagaaactgactgagagtctgtcctct
gaccccaacacccccgtccctgctagccctgctgccacaccccagcctcctggaagtcct
gtcccaccagagaagttggactcgatctcagggcctgctgaagacaaggagcccacagaa
caggaatgcaagaagctatcagaactggagactcatgttagtacagagtcatcatcccag
gtagagaagacggacatcgctcctgacagtgatgagacagagaaaggcagcacagaggac
aaaccagtctcctcagaggagagcagtgaaatgacagacataccctccgcactgatagag
ccatccatcactcctaaagagcctccatccatacagacagagctgttgtccaatcaaagc
tcaccaaaagcggagccctgtcgagagacagagaagtccttagaaaaaggagactgtgat
cctgctccagccaatcctgaggagaaggaactgaatccagttgtttcagacgaggccaag
agcgaggacttgctcgtgcccgagggacggctgaatggagaaaaagaagcacaggaggag
atggaggaggtcaggagggaattactggagaagaatggtttcaagatgaggttcatgttc
aacattgccgacggaggcttcacagagctgcacaccctgtggcagaatgaggagcgggct
gccgtgtcatctgggaagatgtatgacatctggcaccgtcgccacgactactggctactg
gctggcatcgtaacacatggctatgcccgctggcaggacattcagaacgacccacgctat
gccatccacaatgagcccttcaagactgagatgcacaagggaaattacctggagatgaag
aacaagttcctggctcgtcgctttaagctgttggagcaggctctggtgatagaggagcag
ttgaggagggcagcgtacctgaacatgacccaggaccccagccacccggccatggcccta
aacactcgctttgctgaggtggagtgtctggctgagtctcaccagcacctgtccaaggag
tctctggctggaaacaagccagccaacgctgtgctgcacaaaggtctgtcatctcccagt
gtgtacacagcagcaggactaaaacactgtctacaaactcaagatctggtactgaaccag
ctggaggagctgttaagtgacatgaaggcggatgtgacgcggcttcccaacatgttgtcc
cggatccccccagtgtcttcgcgtctgcagatgtctgagaggagcatcctcagccgcctc
accagccgcggcaacgaacctccgccccaacagccgttcggccagggctcatttgcctgt
tcccagatgtacagcactggctttgggggcagtttccgggggcctgcaggtgaagccatg
gtcaactatagccagatgcccctgggaccctatgtcagtgtgtccaacggcccccctcct
ccatccagccacttggacaagaagtcctgcgaccacctgagggatgtcaccacccctgac
cttaagtcaggcaagcccagtgatgttatctgtattgaagattag
DBGET
integrated database retrieval system
