Oncorhynchus nerka (sockeye salmon): 115139039 Help Entry 115139039         CDS       T07952                                  Name (RefSeq) collagen alpha-6(IV) chain-like   KO K06237   collagen type IV alpha Organism one  Oncorhynchus nerka (sockeye salmon) Pathway one04382   Cornified envelope formation one04510   Focal adhesion one04512   ECM-receptor interaction one04518   Integrin signaling one04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:one00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     115139039    04518 Integrin signaling     115139039  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     115139039   09142 Cell motility    04820 Cytoskeleton in muscle cells     115139039  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     115139039  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:one04147]     115139039    00536 Glycosaminoglycan binding proteins [BR:one00536]     115139039 Exosome [BR:one04147]  Exosomal proteins   Exosomal proteins of other cancer cells    115139039 Glycosaminoglycan binding proteins [BR:one00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    115139039 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  115139039 NCBI-ProteinID:  XP_029532072 LinkDB All DBs Position LG12:835503..963945 Genome browser AA seq 1514 aa AA seqDB search MGPSGLKGDKGPMGVPGFPGNDGVPGHPGQDGGRGLPGFDGCNGTQGDPGPRAVDGGIPG ASGLPGPTGPKGQKGEPVYVGTRGGAPGLPGLDGVPGPRGPNGRPGDIGPSGPDGFLGNP GPPGPPGPVGSPSLGFRGEPGAKGNTGPPGPRGVPGDEPLVGSSITTIYKGDKGEGGYKG VSGPSGRPGPPGPFGYPGEKGENGILGYPGGRGPPGFNGPPGSPGRPGFSGSPGFPGQPG YSGPKGDQGEQGPPGPPIYADTQGLAVQGAPGDNGIDGFPGQPGDTGSPGFPGQPGRPGD SFGDGELGDCNCRGGGTAGGVGAPGAPGSDGRPGAFGRKGESGDPGTPGFGGQPGTPGRV GERGFFGRKGEKGASFYPSFSGGIQGEQGAQGLRGPPGNMGRPGRDGLPGSPGQPGPPAD VDGYGTIGERGFPGFSGAKGRAGEPGENGIGYQGSIGSRGFPGDSGFAGLPGQPGLPGPP GLTLPCRLPGEDGIPGLSGIPGRLGPKGEPGFPGGPGRPGFDGGKGERGDPGYGGQPGPQ GFPGPRGDAGGPGIPGEGRPGAPGKNGLPGRPGGKGRPGEVLGSSTGLPGTPGFPGGPGD KGEPGASGLPGGSGFDGRSGIPGAKGERGTDGYPGTLGLPGLPGDRGNGFPGPAGPAGSK GFPGTPGYPGLKGARGDTGFPGPTARKGQPGQPGGDGSSGLRGLLGPPGPGGRNGIPGRP GRKGESGYPGLVGFPGMPGNPGRPGGPGGKGAPGFSGKDGLPGDFGAPGPKGDQGYRGLP GPPALPPRVDYLEKGQRGDNGANGLPGFPGPRGDKGFPGQPGRQGLPGLPGYADRAKGEP GLPGLPGRPAGPGYPGPIGSPGIIGFPGMPGPRGDDGSSGFPGNPGVPGQPGSKGERGDS SGYPGSPGAKGESGTPGYPGGQGANGAPGDNGFPGGPGFSGQKGEAGVPGRPGLLGTPGF TGAKGLNGYPGGRGLDGTTGRPGSPGSSGEKGLSGSPGLHGLNGLAGPNGLPGTPGYSEE GRPGTPGAAGLKGERGSSIPGPPGYNAEKGARGESGGPGMTGFPGLPGRRGETIGSNIPG PLGDPGLPGLDGGEGYGGPPGPPGPPGPSTAQGDRGDAGLPGFPGTPGRRGDPGGPGGPG REGSPGFNGERGDSGYSGVSGTKGYPGDPGYYGGKGPKGRKGSSGRKGPPGITLPPSNFQ TPYGDLGGPGLNGAPGAMGEPGNPGIPGRGGPKGRPGAVGKLGRNGGSGLDGPLGDPGSP GFPGPSGSQGLPGKPGLQGPPGSVARSRSVGFTLVKHSQNNQVPMCPQGMSRLWEGYSLL YVEGQEKAHNQDLGMAGSCLPRFSTVPFLYCTPNEICYYASRNDKSYWLSTTAPIPMMPV GEEAISQYISRCSVCEAMSQAVAVHSQDLTIPTCPAGWRSLWIGYSFLMHTAAGAEGGGQ SLVSPGSCLEDFRATPFIECNGAKGTCHFFANKYSFWLTTVEPNREFNPPPMDTLKGGNQ LSRVSRCQVCSKIL NT seq 4545 nt NT seq  +upstreamnt  +downstreamnt atgggcccctctgggctgaaaggagacaaggggcccatgggcgtaccagggttcccagga aacgacggagtcccaggtcacccaggtcaggacggtggcaggggtctaccagggtttgat ggatgtaacggtacccagggagacccaggtcccagagctgtagatggaggaatacctgga gcttcaggactccctgggcctacgggtcctaaagggcagaagggagaacctgtatatgtt ggaaccagagggggagctcctggtttacctggactggacggtgtacctggtcctagaggc ccgaatggaaggcctggtgacatcggccccagtggtcctgatggattccttggtaatcca ggtccccccggtccccctggtcctgtagggagccccagcctcggcttccggggggaacca ggagctaagggcaacacggggccacccggacctcgaggcgtgcccggcgacgagccgcta gtaggctcatctattaccaccatctacaaaggagataagggggaagggggttacaaagga gtgagtggaccatctggtagacccggcccacctggtccttttggctatcctggcgagaag ggagagaatggaattctggggtatccagggggacggggtcctcctggttttaatggacct cccggatctccaggaagaccaggattctcaggcagtccagggttccccgggcaaccaggc tacagtggacctaagggtgaccagggggaacaggggcctcccgggccccccatctacgca gacacacaagggttggctgttcaaggagcaccaggtgacaatggtatcgacggcttcccc ggccaacctggtgacactggatctccagggtttccaggacaaccaggacgaccaggcgac tccttcggcgatggggaactgggtgactgtaactgccggggaggaggcaccgcgggtggg gtgggggccccgggggctcctgggtctgatggaagacctggtgccttcggcaggaagggc gaaagcggagacccaggcacacccggtttcggaggacaaccaggaacacctggccgtgtg ggcgagaggggtttcttcgggcgtaaaggagaaaagggtgcctccttctatccctcgttc agcggagggatccagggtgaacagggggcccagggccttcgagggccccctggaaacatg ggccgacccgggagagacggacttcctgggtcccccggacagcctggacctcctgctgat gttgatggctatggaaccattggagagagaggattcccagggttctcaggcgccaaaggt cgcgccggtgaacctggagagaacgggattggctaccagggttccatcggctcccgtggg tttccaggcgactcgggctttgcggggttaccagggcaacctggtttacctggccctcca gggctgacgctaccatgtcgtctacctggtgaggatggaatcccaggcctttccggaata cctggaagactaggtcccaagggcgagccaggtttcccaggtggtcccggtcggcccggt tttgacggagggaagggagagagaggagacccaggttacgggggccagcctgggccacaa ggtttccctggccccagaggagatgcgggtggcccaggtatcccaggcgagggtcgtcca ggggccccagggaagaacgggctcccggggcggccaggggggaagggccggccgggggag gtgctggggtcctcaacagggctccctggaacacctgggttcccaggaggaccaggagac aagggagagccaggagcatcaggacttcccggaggatcaggttttgatggtcggtcgggc attcccggagctaagggtgagcgcggtacggatggctaccccggaactctaggtcttccc ggacttcctggagacagaggcaatggatttcccggtcctgctggaccagccggaagcaaa ggatttcccggtactccaggctaccccggtttaaaaggagccagaggtgacacaggcttc ccaggcccaactgcgaggaagggacaaccaggacaaccaggaggggatggatcatcagga ctcaggggccttctgggaccaccgggccccgggggaagaaacggcatccctgggagacca ggaaggaagggcgagagcggttaccctggactggtaggtttccccggaatgcctggtaac cctggaagacctggtggaccaggaggtaaaggagctccggggttctcaggaaaagatggc ctgcccggtgacttcggagcgccaggacctaaaggtgaccaaggttaccgtggtctccct ggcccacccgctctgccccctagggtagattacctggagaagggacagaggggcgacaac ggtgccaacggactacctggtttccctggacctagaggtgacaagggtttcccgggccag cctggtcgtcagggtttgcccgggctgcctggttatgctgacagggctaaaggggaacca ggactccccggtctccccggacgcccagccgggccaggctacccaggccctattggatct cccggtatcatcggcttccctggcatgcctggaccaaggggtgacgatggcagttctggt ttccctggtaaccctggagtccctggtcagccaggatctaaaggggagagaggtgactca tccggctaccccggaagtcccggagctaaaggtgagtccggaacccccggttacccaggt ggccaaggtgctaatggcgcccccggcgacaacggtttcccagggggccctgggttcagc ggacagaagggagaagcgggagttcctggaagacccggactcttgggtacccctggtttc actggggctaagggtctgaacggatacccaggaggaagaggtcttgacgggacgactggc cgccccggctcccctggatcatctggagaaaaaggtctgtcgggatctcctggtcttcat ggactcaacggactggctggaccgaacggtctaccaggaaccccgggttatagtgaggag gggcgccccggcacccctggagcggccggtttgaagggagagaggggatcctccatccca ggacccccgggatacaacgcggagaagggagcgagaggagagtcagggggtcctggtatg acaggcttcccaggtctgcctggtcgtcgtggggagacaatcggctccaatatccctgga cctctgggagacccaggcctgcccggactcgatggaggagaaggttacgggggtcctcca ggccccccaggcccaccggggcccagtacggcccagggagacaggggtgacgcagggcta cctggcttccccggcacccctgggagacgtggagaccctggaggtcccggtggcccagga agggaaggcagccctgggttcaatggagagagaggcgactctgggtacagtggagtgtca ggaaccaaaggctaccctggagatccaggatattacggagggaaaggacccaaaggaagg aaaggttcttctggtcgtaaggggcccccaggtataactttacccccctcgaacttccag actccctatggagacttgggaggccctgggctcaacggagctccaggggccatgggagaa ccaggcaatcccggcattccaggcagagggggtcctaaaggcaggcccggtgcggtgggg aagctagggaggaacggagggtcaggtctggatggacctctgggagaccctggttctcct ggattccctgggccttccggatcacaaggtctgcctggtaagcctggtctgcagggtccc cctggcagtgtggcccgcagcaggagtgttggtttcaccctggtgaaacacagtcagaac aaccaggtacccatgtgtccccagggcatgtcccggctctgggagggatacagtctgctg tacgtagaggggcaggagaaggcacacaaccaggacctcggtatggcgggctcctgcctc ccccgtttcagcactgtccccttcctctactgcacgcccaacgagatctgttactacgcc agccgcaacgacaagtcctattggctgtccaccactgcgcccatccccatgatgccggtg ggagaggaggccatcagccagtacatcagcaggtgctctgtgtgcgaggccatgtcccag gctgtggccgtccactcccaggacctcaccatccccacctgccctgctggctggaggtcc ctctggatcgggtactccttcctcatgcacacagctgccggggcagagggcggaggccag tcccttgtttcacccggctcctgtctggaagacttccgtgcaactcccttcatcgagtgt aacggggctaagggcacctgccacttctttgccaacaagtacagcttctggctgaccacg gtggagcctaaccgcgagttcaacccccctccgatggacacgctgaagggaggcaaccaa ctcagcagagtcagtcgctgtcaggtctgcagtaagatcttgtag

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