Oncorhynchus nerka (sockeye salmon): 115139092
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Entry
115139092 CDS
T07952
Name
(RefSeq) protein Smaug homolog 1-like
KO
K27396
protein Smaug
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115139092
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115139092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
PHAT
SAM_3
Motif
Other DBs
NCBI-GeneID:
115139092
NCBI-ProteinID:
XP_029532120
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All DBs
Position
LG12:21679242..21770856
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AA seq
734 aa
AA seq
DB search
MMFRDQVGVLGSWFKGWNECEQTVALLSLLKRVSRTQARFLQLCLEHSLAECTELHVLEG
EANNPVVISQWQGEPKERVISLVLTHLPLLKPGNVEAKGEYMRLLPRILAHTIDHGRHLE
ESRQLLSYALIHPATSLDDRAALALWLNHLEERAAARGDSLERPPPAPASLHQTPPSTHS
LSGSSWSSSASHLGQLYHHQRYGSDDRLNGWQGSRDSGLGSGWHQQQQGHGGCENGGHLA
LYPSSSVPGSINTVGTGGSILSGGGGGQHSPLKRSVSLTPPMSGCSLASSSSSSGGQALG
LGHGWISQEDLRGPRGGGGLGLAPTDPHHAPLSPQSSVASSGSGGSEHLEDGGGLHRSST
FHEEGSCMRVFPLDYCPGVAQRPPKQHPGPLGTNRVGQGGLPQLYNDVPAWLKSLRLHKY
AALFSTMTYDEMMSLTEQQLESQNVTKGARHKIVISIQKLKERQKMLRCLEKDVLEGGNL
RGPLAELHQMILTPIKAVASDESSPSSPSSTAHRPLLSPDGKSSAAPGGGEGETGTALIA
EGDIPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCLLHEVYTSSSSRGFSQSNSLP
TAGCVGGSSSVSAARRSLRQFQMPSRSLPGARLGLLGPTPHSASSTPTGLKQGRQGLWFA
NPGGSNSMPSRTHSSVQRTRSLPVHTTPHTMVMFQQSDLQVPVTEPDINNRLESLCLSMT
EHALGDGVDRTSTI
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttcgcgaccaggtgggtgtcctgggaagctggtttaagggatggaatgagtgt
gagcagacggtggctctgctgtcgctgctgaagcgggtgtcgcggacccaggcccgtttc
ctgcagctgtgtctggagcacagcctggcagaatgcaccgagctccacgtgttggagggg
gaggccaataacccagtggtgatcagccagtggcagggcgagcccaaggagcgcgtcatc
tccctggtcctcacccacctgcccctgctcaagccgggcaacgtcgaagccaagggcgag
tacatgcgcctcctcccccgcatcctggcgcacaccatcgaccatggccgccacctcgaa
gagtcacggcagctcctctcctacgccctcatccacccggccacctcgctggacgaccgc
gccgccctcgccctctggctcaaccatctggaggagcgcgccgctgcccggggtgactct
ttggaacggccaccccccgccccggcctcactccatcaaacgcccccctcgacacactcc
ttgtcggggtccagttggagttcctcagcgagccacctgggtcagctgtaccaccaccag
cgctacggctcggatgataggctcaacggctggcaggggtccagggactcgggattgggc
agtggttggcaccaacagcagcaggggcatggagggtgtgagaatggcgggcacctggca
ctctacccgtcctcctcggtgcctgggagtattaacacggttggcacgggcgggagcatc
ctgtccggcggtggcggcgggcagcacagtcccctgaagcgctcggtgtccctcaccccc
ccgatgagcggctgctccttggccagttcctcctcctcgtcgggcggccaagccctgggc
ctgggtcatggttggatctcccaggaggacctgcgcggtccccggggaggaggagggctg
gggctggcccccaccgaccctcaccacgctcccctctcccctcagagcagcgtagcgtcg
tcgggcagtggcggcagtgagcacctggaggatggaggaggcttgcaccgcagcagcaca
ttccacgaggagggcagctgcatgagggtctttcccttagattattgtccaggcgtggcg
caaaggcccccaaagcaacatccaggccctctggggaccaacagagttgggcaggggggc
ctgccccagctttacaatgatgtgccagcctggctgaaaagcctccgtctccacaaatat
gcggcgctcttctccactatgacttatgacgagatgatgtcactgaccgaacagcagctg
gaatcacagaatgtcaccaaaggggcacggcacaagatagtgatcagcattcagaagctg
aaggagcgtcagaaaatgctgcgttgcctagagaaggatgtgttggagggcggtaacctg
cgtggccctctcgccgagctccaccagatgatcctgacgcccatcaaggcggtggccagc
gatgagtcgtcccccagctctccctcctcgaccgcacacaggcccctgttgagcccagac
gggaagagcagcgccgccccgggaggaggggagggggagacggggaccgcactcatcgcc
gagggggacatccccggccagttcacccgcgtcatgggcaaagtttgcacacagctcctg
gtgtccaggcccgacgaagagaacatcagctcctacctgcagctcattgacaagtgcctt
cttcacgaggtatacaccagcagcagtagccgtggcttcagccagtccaattctctcccc
acagcaggctgcgtggggggcagcagcagcgtgtcggcggcccgtcgcagcctccgccag
ttccagatgccctctcggagcctgcccggcgccaggctgggcctgctgggacccacgcca
catagcgccagcagcacccccactggcctcaagcagggacgacagggtctttggttcgcc
aaccccgggggcagtaacagcatgccaagccgaacccacagctcagtgcagaggacccgc
tccctgcctgtccacaccacgccacacaccatggtcatgttccagcagtctgatctccag
gtgccggtgactgaaccagacatcaacaaccggctggagtctctgtgtctgagtatgacg
gagcacgctctgggagatggagtcgaccgcacatccaccatctga
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