Oncorhynchus nerka (sockeye salmon): 115139149
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Entry
115139149 CDS
T07952
Name
(RefSeq) poly(A) polymerase beta-like isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115139149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115139149
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
115139149
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
115139149
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Motif
Other DBs
NCBI-GeneID:
115139149
NCBI-ProteinID:
XP_029532142
LinkDB
All DBs
Position
LG13:863348..895813
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AA seq
778 aa
AA seq
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MALPTANQVALGRETPKHYGITSPISLVQAKEADLVLTHRLTEALKPYGVFEEELELQRR
IHVLGKLNTLVKEWIRDVSETKNLPASVIESVGGKIFTFGSYRLGVHTKGADIDALFVAP
RHVERTDFFSSFLDKLKEQEEVKDLRAVEEAFVPVIKLSFDSIEIDILFARLALQTIPKN
LDLRDDGLLKNLDIRCIRSLNGCRVTDEILHLVPNIENFRLTLRTIKLWAKRHNIYSNIL
GFLGGVSWAMLVARTCQLYPNAVASTLVHKFFLVFSKWEWPNPVLLKQPEDCNLNLPVWD
PRVTPSDRYHLMPIITPAYPQQNSTYNVSVSTRAVMVDEFKQGLSITDEILQNKAEWSKL
FEAPNFFQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGNLEKNEFITLAHVNPQSF
PGPKESREKEEVSTMWVIGVIFKKMETSENLNVDLTIDIQSFTDTVYRQAISSKMFEADM
KIQAMHVKKRQLHQLLPSLVMPKRRKHSTEGLRQMNDSSLDLSLDSDNSMSVPSPTALSA
AVPTSTPVKSGPLGPPPSPIAAAASQPEIQASTMSPPAVKRPGSPMQEERKRLKSDSEES
ATERQTSGDPVPSSQTTSPPPTMGPPAAPQTPSPPATMCPPVAQKAPQPPPPPPTIGPPV
AHKTPNQEVLEEKSPKEHQMEDPSIVPEAKTEDSGAASVGEGEGGTSVEAEVHNKLIVMA
QFHVNEDSISEEMAASEGEVKMEANITRMVSTDLSDVPLLPANPIPVVKNSIKLRLSR
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggctcttccaactgctaaccaggtggcgttgggtcgggagactcccaaacactatggg
atcacttctcctatcagcctggtccaagctaaggaggctgaccttgtcctcacacacagg
ctgactgaggccctgaaaccgtacggggtgtttgaagaggagctggaactacaacgcaga
atacacgtgttgggaaaactgaacacactggtgaaggaatggatccgcgacgtcagtgag
acaaagaatctgcctgcctcggtgattgagtctgttggagggaagatattcacatttggg
tcgtacaggttaggagttcacactaaaggggcagacattgacgccctgtttgtggctcct
cgacatgtggagagaacggacttcttctcctcgttcctggacaagctgaaggagcaggag
gaagtcaaggatttgagggctgttgaggaggcatttgtcccggtgataaagctgtctttc
gacagcattgagatcgacatcctgtttgcacggttagctttgcaaacaatcccaaagaat
ctggaccttcgagatgacgggctgctgaagaaccttgacatccgctgcattaggagtctc
aatggttgcagagttacagatgagatcctccatcttgtacccaacattgagaacttcaga
ctgactctgaggaccatcaagctgtgggctaaacgtcataacatctacagtaacatcctg
ggcttcctgggtggagtctcctgggccatgctggtagccaggacctgccagctctacccc
aacgctgtggcctccaccctcgtacacaagtttttcctcgtcttctctaagtgggaatgg
cccaaccctgttctcctgaagcagccagaggactgcaacctgaacctgccagtctgggac
cccagggtgacccccagtgaccggtaccacctgatgcccatcatcacaccagcctacccc
cagcagaactccacctacaacgtctccgtctccacacgggctgtcatggtggacgagttc
aaacagggtctgtccatcacagatgaaattttgcagaataaagcagagtggtccaaacta
tttgaagcaccaaacttctttcagaaatacaagcattatattgtgttgctagcaagcgcc
cccaccgagaagcagcacctggaatgggttggtctagttgagtctaagatcaggatcctt
gtgggaaacctggagaagaatgagttcataacgttggcccatgtcaacccccagtcattc
cctggacccaaggaaagcagggagaaagaggaggtcagcaccatgtgggtgataggggtt
atctttaagaagatggagacatcagagaacctcaacgttgacctgaccattgacatccag
tcctttactgacacggtgtatcgccaggcgatcagcagtaagatgtttgaggcagacatg
aagatccaggccatgcatgtgaagaagagacaactgcatcagctactgcccagcctggtc
atgcccaaacgcaggaagcactctacagaggggcttcgtcagatgaatgacagtagtctg
gacctatcgctggacagtgacaacagcatgtcagtgccctcccccacagccttgtcagcc
gcagtgcccacgtcgaccccagtgaagagtggcccgctaggtccccctcccagtcccatc
gcggcagcagccagccaaccagagatccaagcttccactatgagtccgccagctgtgaag
agacctggttccccaatgcaagaagagaggaagaggttaaaatcagactctgaggagtca
gccactgagagacagacctcaggagaccccgtccccagcagccagaccacctctcctccc
cccaccatgggtccccctgcggccccccaaaccccgtcccctcccgctaccatgtgtcct
ccagtggcccaaaaggccccccaacccccccctcctccccccaccataggtcccccagtg
gcccacaagacccctaaccaggaggtgctggaggagaagagccctaaggagcaccagatg
gaggacccctccatagtcccagaggcaaagacagaggatagtggtgcagctagcgttgga
gagggagaggggggcacctctgtggaggcagaggtacacaacaagcttatcgtcatggcc
caatttcatgtcaatgaggacagtatatctgaggagatggcggcttctgaaggggaagtg
aagatggaggcaaacattacgagaatggtgagtacggatctgtctgacgtgcctctcttg
ccagccaaccccattccagtggtgaagaactctatcaagcttcgtctcagcaggtag
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