Oncorhynchus nerka (sockeye salmon): 115139159
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Entry
115139159 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115139159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115139159
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115139159
U7-dependent histone pre-mRNA processing factors
115139159
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Beta_lactamase3
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
115139159
NCBI-ProteinID:
XP_029532152
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Position
LG13:complement(1594105..1607986)
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AA seq
796 aa
AA seq
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MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLGRYLIDNPGEKMLDLEIRKRVKLEGRELEEYLEKERMKKEAAKKLEQEKEVDVDSS
DESDMEDDLELPAVVKTKHHDLMMKGDGVRKGSFFKQAKKSYPMFPTHEERVKWDEYGEI
IRPEDFLVPELQATEEEKNKMESGMANGDEPMDQDSSSKVPTKCTSTTENLEIKARVTYI
DYEGRSDGDSIKKIINQMKPRQLVIVHGPPEATXDLAESCKAFTKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCRAKDTELAWIDGVLDMRVVKVDTGVLPEEGMVKGEKGT
GEEVVEDSELAMDVTPADDATTDHSVVAQQRAMKTLFGEDVRELSEESDVIPTLEPLPAH
EIPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCD
DYYKIRELLYQQYAVV
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctatcatcaaactgactgctgtgtcaggggtgcaggaggagtctgccctctgc
tacctgctgcaggtggatgagttccgcttcctcctggactgtggctgggatgagagcttc
tccatggacatcattgattccatgaaaaggtatgtccaccaggttgatgcggtgctcctc
tcccatcctgaccccctgcacctgggggccctgccctatgctgtgggcaagctgggccta
aactgccccatatatgccaccatccccgtctacaagatgggtcagatgttcatgtatgac
ctgtatcagtcgcgcaacaacactgaggacttcaacctgttcaccctggatgatgtggac
tgcgctttcgacaaaatccagcagctgaagtactcccagattgtcaatctgaaaggaaaa
ggacatggtctgtccatcactccacttcctgctggtcacatgatcggagggaccatctgg
aagattgtgaaggatggggaggaggagattgtttacgcggtggacttcaaccacaaaaga
gagatccacctgaatgggtgtacgttggagtcggtgagtcgtccctctcttctcatcaca
gactcgttcaacgctacatacgtgcagccacgtcgcaagcaaagggacgagcagctcctt
accaatgtaatggagaccctacgcggcgacggcaacgtgctgatcgcggtggatacggca
ggccgtgtactggagctggctcagctgctggaccagatctggaggacaaaggacgccggg
ctgggggtctactctctggccctactcaacaacgtcagctacaacgtggtggagttctcc
aagtctcaggtggagtggatgagtgacaagctgatgcgctgcttcgaagacaagcgcaac
aaccccttccagttccgtcacctgtccctgtgccacagcctggccgacctggcccgcgtg
cccagccccaaggtggtgctctgcagtcagcccgacctggagtctggcttctcccgcgag
ctcttcatccaatggtgtcaggacgccaagaactctgtgattcttacctaccgtaccacg
cccggcaccctgggccgctacctcatcgacaaccccggggagaagatgctggacctggag
attaggaaacgggtgaagctggaaggcagagagctggaagaatacctagagaaagagaga
atgaagaaggaagctgccaaaaaacttgaacaagaaaaagaggtggacgtggactcgagt
gatgagagcgacatggaggatgacctggagctgccggcggtggtgaaaaccaaacaccac
gatctcatgatgaagggagacggcgtccgcaagggcagcttcttcaaacaggccaagaag
tcttaccccatgttccccacccacgaggagagggtcaaatgggatgagtacggagagatc
atcagaccggaggacttcctggtaccagagctccaggccactgaggaggagaagaacaag
atggagtcgggcatggccaacggggacgaacccatggaccaggactcctcatccaaagta
cccaccaagtgtacctccactacggagaacctagagatcaaagccagggtgacttacatc
gactacgagggccgctcggacggcgactccatcaagaagatcattaaccaaatgaaaccg
cggcagctggtgatcgtgcacggcccccccgaggccaccntggacctggccgagtcctgc
aaggccttcaccaaggacatcaaggtctacacgcccaagctgcaggagactgtggatgcc
accagtgagacacacatttaccaggtgcggttgaaagactcactggtgagctcgctgcag
ttctgccgcgccaaggacacagagctggcgtggatcgatggcgtactggacatgcgcgtg
gtcaaggtggacacaggcgtgctgcctgaggagggcatggtgaaaggcgagaagggaact
ggcgaggaggttgtggaagacagtgagctggccatggacgtgacccctgctgacgatgcc
accacagaccatagcgtggtggcgcagcagcgcgccatgaagacgttgtttggcgaggat
gtgcgcgagctgtcggaggagagtgatgtcatccctaccctggagcctctgcctgcccac
gagatcccaggccatcagtcagtgtttatcaacgagccgcgcctgtccgacttcaagcag
gtgctgctgagggaaggcatccaggctgagtttgtgggaggagtgctggtgtgcaacaac
atggtggccgtccgcaggacggaggcggggcgcatcggcctggaaggatgcctgtgtgat
gactattataagatccgtgagctgctgtatcagcagtatgctgtggtgtag
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