Oncorhynchus nerka (sockeye salmon): 115139210
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Entry
115139210 CDS
T07952
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5-like
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
one04990
]
115139210
Domain-containing proteins not elsewhere classified [BR:
one04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
115139210
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
I-set
LRR_4
Ig_3
LRR_5
ig
LRR_9
Ig_2
LRR_14
fn3
LRR_Zer-1
Sp38
DHU1_N
LRR_EndoS
Ig_DSCAM-DSCAML_C
C2-set_2
Motif
Other DBs
NCBI-GeneID:
115139210
NCBI-ProteinID:
XP_029532214
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All DBs
Position
LG13:4582390..4614353
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AA seq
773 aa
AA seq
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MFTLLVYLMVLGMAVKAHKVQVCPKRCVCQMLNPNLATLCDKKGLLFVPPDIDRHTVEMR
LGDNFVTSIKRRDFANMTKLQDMTLSRNTIGSISPHAFKDLENLRALHLDSNRLTRLTND
TFSGMSKLQHLILNNNQLIHIHIGAFNDLTALEELDLSYNNLESAPWVAIQRMTSLHTLG
LDHNMLSYIPEGTFSGLQKLKRLDVTSNKLQKLPPDPVFQRAGVLATSGSLGPMSFALSF
GGNPLRCNCELLWLRRLRREDDLETCAAPQHLAGRYFWTVSEEEFLCEPPLITRHSQELR
ALEGQSVALRCKARGDPDPIIHWIAPDGRLMSNSSRAAVHSDGTLDILISTVKDSGSFIC
VASNPAGESQQTVDLVIAKLPHITNSTVEKEQDPGSSDIATVTRTGGGGEGGGVVPLGNT
KTSQEKKVVIAEATSTSALVKFSFQRSIPGIRMFQIQYNGTYDDSLVYRMIPPSSKSILV
NNLAAGTQYDLCVLAIYDDLVTSLTATRVVGCVRFTTDPQYLRCHFMQSQFLGGTIVVII
GGIIVASVLAFIVFLIVRYRVCNQGDEDKALEMGEIRSLSSDGQLQGCGVPKSMSKSLSK
QILCLEKPEKGDNEYLRVGLPPPELFKQQRPPVLTTTTSTKQSIPDCQTDVELENTNRNN
SAEAKMVVPAVSTKWTKVARGPSPPGGSSHHYMTVPAGGVRVNRRHSLNMDSYKECCYFS
LVQQQQPKPGRGLRSKRSLSMSGELPQLESAMANIHRSRDKLYGSEWLLESTL
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgtttaccctgttagtttacctgatggtacttggcatggctgtaaaagcccacaaggtc
caggtgtgcccaaaacgctgtgtctgccagatgcttaaccccaacctagcaaccctctgc
gacaagaagggcctcctcttcgtcccgcccgacatcgaccgtcacaccgtggagatgcgt
ctgggcgacaacttcgttacgagcatcaaacgacgggacttcgccaacatgaccaaactg
caagatatgacgttgtctcggaacaccattggctccatctcgcctcatgcctttaaagat
ctggagaacctcagagccttgcatctggacagcaaccgtctgacgaggctcaccaacgac
accttcagtgggatgtccaagctccaacatctcattctcaacaacaatcagctgattcac
atccacatcggggccttcaatgatctcacagctctagaggagttagatctgtcctacaac
aacttagaaagcgccccctgggtggccatccagagaatgaccagcctccacaccctgggc
ttggaccacaacatgcttagctacattcctgagggaaccttctctggcctgcagaagctc
aaacgccttgacgtcacatccaacaagctccagaagcttccgccagacccagtgttccaa
cgggccggtgtcttggccacatcagggagcttgggtccgatgtcatttgcgttgagtttt
ggggggaacccactgaggtgtaactgtgagctgctgtggctgaggaggctgaggagggag
gatgatctggagacatgtgcggctccgcagcacctggctggacggtacttctggaccgtg
tctgaagaagagttcctctgtgagccccctcttatcaccagacactcccaggagctgcga
gcgttggagggtcagagtgtagctctgcgctgtaaggccaggggcgacccagaccccatc
atccactggatcgccccagacggccggctcatgtccaactcctcccgggctgcagtgcac
agtgatgggaccctggacattctcatcagcactgtgaaggactcaggctccttcatctgt
gttgcctccaacccggccggggagtcccaacaaactgttgacctggtgatcgccaaactc
ccacacatcaccaacagtactgtggagaaggaacaggaccccggatcttctgatatcgcc
acggtaacgaggacgggtggtggtggggaaggcggaggagtggttccactgggaaacaca
aagacgagccaggagaagaaggtggtgatagctgaggccacgtctacttcggccctggtc
aaattcagcttccagagaagtataccgggcatccgaatgttccagatccaatacaacgga
acctacgatgactctctggtttacagaatgatccctccgagcagtaagagtatcctggtg
aacaacctggctgccggtacacagtacgacctgtgtgtgctggccatctacgacgacctg
gtgacctccctgaccgccacgcgggtggtggggtgcgtccgcttcaccaccgatccccag
tacctccgctgccacttcatgcagtcccagttcctgggagggaccatcgtggtcatcatc
ggagggatcatcgtggcgtccgtcttagccttcatcgtcttcctcatagtgaggtaccga
gtctgtaaccaaggcgatgaggacaaggctttggaaatgggtgagatccggtctctgagc
agtgatggtcagctccagggctgcggcgtccccaagtccatgtccaagtctctgtccaag
cagattctctgtctggagaaaccagagaagggggataatgagtatctgagggtgggcctt
cctccccctgagctgttcaagcagcagcgacccccagtcctgaccaccaccacatccacc
aagcaatccattcccgactgccagacagatgtggagttagagaacacaaaccggaataac
tcagcggaagctaaaatggttgttcccgccgtttccacaaaatggacaaaggtcgctaga
gggccaagcccccctggagggtcctcccaccattacatgacagtgccagcagggggcgtg
agggtgaaccggcggcactctctgaacatggactcgtacaaggagtgctgctacttcagc
ctggtacagcagcagcagccaaagcctggtaggggtttgcgctccaaacgcagtctgtcc
atgagtggagaactgccccagttggaaagtgcaatggcaaacatacacagaagcagagac
aagctgtatggatccgagtggcttctcgaaagcactctatga
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