Oncorhynchus nerka (sockeye salmon): 115139253
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Entry
115139253 CDS
T07952
Symbol
gen1
Name
(RefSeq) flap endonuclease GEN homolog 1 isoform X1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
one03400
]
115139253 (gen1)
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
115139253 (gen1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPG_I
Chromo_2
XPG_N
Motif
Other DBs
NCBI-GeneID:
115139253
NCBI-ProteinID:
XP_029532289
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All DBs
Position
LG13:7240217..7248282
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AA seq
976 aa
AA seq
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MGVHDLWSILGPVRESVPLYSLTGKTLAVDLSLWVCEAQHVQAMMGKVTKPHLRNLFFRV
SSLTLMGVKLVFVMEGEAPKLKAETMSKRTDMRFGGFNKSAPKKQTTKTTNRGRFNAVLR
ECAEMLDCLGVPWVTAAGEAEAMCAFLDAQGLVDGCITNDGDAFLYGAQTVYRNFNMNTK
DPQVDCYRTSRVETELQLARETLVGLAILLGCDYIPKGIPGVGKEQALKLIQTLKGQTLL
QRFSQWREEGVVAPEWVLKKVPHCHLCRHPGSAKAHERSGCVLCDSKHFCEPQDYDYQCP
CHWHCCEQTRQASSTDASIRKKTLASDKFPFTEIINEFLVDKDKPVHNFKWRKPNMLLMQ
NFAYNKLEWPKHYTSKKVLVLMTYTELMNRKHGRATLSLIKPLRIWKPRVRNAIASFEII
WSKPDHYVFSEDHPEDSQDEVRTVEEEALFRLAYPHVVELYLREKAENKTKKKKPKGKKD
KPSDHCDVSDLLAKMSLHSSTADNNTQHPSAVAAALTITTSNNSVLVLEGPESESPKKHL
DSGKDHPRLEVRLGAQIQEVMSPPSFTSSGKIPEAAASSPSVSVVMDALHLSDIDWESQS
FTSSPPPQAAGARTATDPKSLQTTNDSVEERITQLGPSTDLRAAEAVPGPCYAECSLRDR
VLMRNACKSVNMADNDDITIIHVNSQSAAPPDLIDSNNSGPKPMALIPIKSSNDSKPSQQ
LLVCGKKATLVDKDQSIALLHKPQPAHHISKPISLNATQTGPVTAKQTGPVTATQTQGAK
QHGAGEPKPPQKYRFVKKAISSSSALPQRSHSEPSDTQPGRDDRHMKSHQETKKSVCARA
CSSSEDSDTENQCRGGGQSRAKVKPKSRHRCQYLTDYSLKPTSKPRTSTKAAWDTVTAQP
LRPRTVSASMGEQPIRGSSVSTIGKCQDVHPIRVDDDIVFIPSPVSPVIMSDGDDSVICS
KSPLPLAERVKLKFLK
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgcacgatctgtggtccattctggggccggttcgggagtcggtgccgttgtac
agcctcaccggaaagaccctggccgtggaccttagcctgtgggtctgcgaggcccagcac
gtccaagcaatgatggggaaagtcaccaaacctcacctccggaatctgttttttagagtt
tcctctctcacactgatgggggtaaagctagtttttgtcatggagggagaggcccccaaa
ctcaaagcagagaccatgagcaagaggacagacatgagatttggggggttcaacaagtca
gcccctaaaaaacaaactacaaagaccaccaacaggggtcgcttcaatgctgtgctgaga
gagtgtgcagagatgctggactgtctgggtgtcccctgggtgacagcggcaggggaggcc
gaggccatgtgtgcctttctggatgcccagggcctggtggacggctgcatcaccaacgat
ggggacgcttttctctacggagcgcagaccgtctacagaaacttcaacatgaacaccaag
gatccacaggtggattgttacaggacttctagggtggagacagagctgcagctagccagg
gagacactcgtgggtctggccatccttctgggctgtgattatattcctaagggtatacca
ggagttgggaaagagcaagctctaaaactcatacagacattgaaaggacaaacactttta
caaagattcagccagtggagggaggagggcgtggttgcgccagagtgggtcctaaagaag
gtccctcactgccatttgtgtcgccatcctgggtcagccaaggctcacgagcgcagtggc
tgtgtgttgtgtgacagcaagcacttctgtgagcctcaagactatgactaccagtgtcct
tgtcactggcactgctgtgagcagacacgacaggcctcttcaacagatgccagcatcagg
aagaaaacactggcaagtgataaattcccttttacagagatcataaatgaatttctggta
gacaaagacaagcctgtccacaatttcaaatggaggaaaccgaacatgctattaatgcag
aactttgcgtacaataagttggagtggcctaaacactataccagtaagaaggttctggtc
ctgatgacgtacactgagctgatgaacagaaaacatggaagagcgacgttgtctctgata
aaacctctacgtatatggaagccaagagtaaggaatgcaatcgccagctttgaaatcatc
tggagtaagccagatcactatgtgttttctgaggaccaccctgaggacagccaggacgag
gtgaggacggtggaggaagaggctctgttccgcctagcctacccacatgtggtggagctg
tacctcagggagaaggctgagaacaagaccaagaagaagaaaccaaagggtaagaaagac
aagccttcggatcactgtgatgtttctgacctcctggccaagatgtctttgcacagttcc
actgctgacaacaacacccaacacccctctgccgtggcagcagcactgaccattacaaca
agtaacaactcagtgttggtcctggagggtccagagtcagagtctccaaaaaagcatctg
gattctggtaaagaccatccccgcttagaagtacgtcttggagctcagatacaggaagtg
atgtcacctccgtctttcacttcctctgggaagattccagaagcagcggcctcctctccg
tctgtttccgtggtgatggatgctcttcacctgagtgacatcgactgggagtctcagtca
ttcacgtcctccccgcccccgcaggctgctggcgctcgcactgccactgaccccaagtca
ctccaaaccacaaatgatagtgttgaagaaaggatcacacaactgggcccctctactgat
ctcagagcagcagaggccgtaccagggccatgttatgcagagtgttcgctgagggacagg
gtcctaatgagaaacgcatgcaagtctgtgaacatggcggacaatgatgacatcaccatc
atacacgtaaactcccagtcagcagcaccccctgatttaattgattctaacaacagtggc
cccaagccaatggcactgatacccattaaaagcagcaatgattccaagccatcacaacag
ctgctggtgtgtggcaagaaagccacacttgttgataaggaccagagcattgcattgctc
cataagcctcaacctgctcatcacatctcaaaacctatctcattgaacgcaacacaaaca
ggcccagtcacagcaaaacaaacaggcccagtcacagcaacacaaacacaaggggctaaa
caacatggtgccggtgaaccaaagcctccacagaagtacagattcgtaaagaaggccata
tcatcttcttccgctctgccacaaaggagccattctgaacctagcgacacacagcctggt
cgggatgacaggcacatgaagtcacatcaagaaactaagaagagtgtgtgtgccagagcg
tgttcatcgagtgaggacagtgacacagagaaccagtgtcggggaggagggcagagcagg
gccaaagtcaaacccaaaagcaggcacaggtgccaatacctcacagactattcactgaaa
cccacctccaaaccccgcacctctacaaaggcagcctgggacacagttacagcccagccc
ctcaggcctagaactgtgtctgccagtatgggtgaacaaccaatacgaggcagctctgtg
tctaccatagggaagtgccaggatgttcatccaattagagttgatgatgacattgtgttc
attccaagccccgtttccccagtgattatgtctgatggtgatgactcagtgatttgtagc
aagagcccactgccattggcagagagggtgaagctgaagttcctgaaatga
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