Oncorhynchus nerka (sockeye salmon): 115139359
Help
Entry
115139359 CDS
T07952
Name
(RefSeq) patched domain-containing protein 1-like
KO
K24682
patched domain-containing protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
one04990
]
115139359
Domain-containing proteins not elsewhere classified [BR:
one04990
]
Other domain-containing proteins
Patched domain-containing proteins
115139359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
115139359
NCBI-ProteinID:
XP_029532497
LinkDB
All DBs
Position
LG13:complement(11928899..11962467)
Genome browser
AA seq
920 aa
AA seq
DB search
MCFIGRNGASASWIWRRMLRQMIHRGLKASFYWLGLFVSRHPVFFLTVPAVLTIIFGSTV
LSRFKPETDLEILVAPTHSFAKVERSLANSLFPIDQSKNKLYSDLHTPGRYGRLILLAKS
GGNILELADQVLQVHKQVLDLSVNYKGFNYTFAHLCVLSHQDKRCILDDIITIFEDIRLA
ILSNYTFSKVPVSYPNTTLKDGRVSFIGHQLGGVAFSPNSRDQQVKFARAVQITYYLRNH
GPVVQDVIAEKWENAFCALISRLSTLSEDLHIQSLTSFSLWRDFHQTGVLAKGEVLVSMV
LLLLAATISSSMRDCLRGKPFLGLLGVLTIAIANVTAAGIFFISDGKFNSTLLGIPFFSM
GHGTKGVFELLAGWRRTRESLPFKERVADAFADVMVCYTMTSSLYIITFGMGASPFTNIE
SVKIFCQSMCVAVLVNYFYVFSFYGSCLVFAGQLEQNRYHSVFCCKIPSVEYLDRQPTWF
KTMMSDGHDHVTHHEVLPYHNHFIQHFLREHYTEWITNTYVKPFVVILYLIYASFSFMGC
LQISDGSNIVNLLASNTPSVSYATTQQKYFSNYSPVIGFYIYEPIEYWNSTVQEHLTTLS
HGFNKISWMDNYFQYLKVVNVSASTKSDFITILQGSFLRSPEYQHFMEDIILSKTDGDEM
EIIASRMYLVARTTEKTREEVVELLERLRPLSLINNIKFIVFNPTFVFMDRYSSSVVSPI
LTSAFSVLTILILTFFLVINPLGNFWLILTVTSVELGVLGLMTLWNVHMDSISILCLIYT
LNFAMDHCAPHLYTFVLATEHTRTQCIKISLEEHGAAILQNACCFIIGMLPLVFVPSNLT
YTLFKCSLLTAGCTVLHCFVILPVFLTFFPPSKKRHKKKKRAKRKEREREREMMERERVR
EREEIECIEVRENPDHVTNV
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttcataggaagaaacggggcatctgcaagctggatctggaggaggatgctgcgg
caaatgatacacagagggctcaaagcttctttctactggctgggcttatttgttagtagg
catccggtttttttcctcaccgttcccgcagtcttaaccatcattttcggatctacagtc
ctgagcagattcaagcccgaaacggacctcgagatactggttgccccgacccacagcttt
gctaaagtagagcggagtcttgcgaacagccttttccccatcgaccagtctaaaaacaag
ctgtattccgacctgcacacccccggcagatatggcagactgattctactggccaagtct
gggggaaatatattggagctagccgaccaggtcctgcaggttcacaagcaggtgttggat
ttgagtgttaattacaagggattcaattacactttcgctcatctctgtgtcctgagccat
caggataagcgatgcatcttggatgatataattacgatattcgaagatatccgtttagct
attctgtcgaattatactttctcgaaggtgcccgtgagctatccaaatacaaccttaaag
gacggtcgtgtgtccttcatcggccaccagctgggtggagtggccttctcgcccaacagc
cgagaccagcaggtgaagtttgcccgtgccgtccagatcacctactacctccgcaatcat
ggccccgtggttcaggacgtcatcgcagagaagtgggagaacgccttctgcgccctcatc
tcgcgcctgtccacgctcagcgaggacctgcacatccagtctctcacctccttcagcctg
tggagggacttccaccagacgggagtgctggctaaaggggaggtgttggtcagcatggta
ctcctcctgctggcagccaccatctccagctccatgagggactgcctgagggggaagccc
ttcctgggtctactgggtgtgctcacaatagccatcgccaacgtgactgcagctggcatc
ttcttcatctccgacgggaagtttaactccacgctgctggggatccccttcttttccatg
ggtcatggaaccaaaggagtgtttgagctcctggcgggctggagaagaactcgagagagc
cttcccttcaaggagcgcgtggcagacgccttcgccgacgtgatggtgtgctataccatg
accagttccctctacatcatcacctttggcatgggtgccagccccttcaccaacatcgag
tcggtgaagatcttctgccagagcatgtgcgtagccgtcctggtcaactacttctacgtg
ttctccttctatggttcctgcttggtgttcgctggtcagctggagcagaaccgctaccac
agtgttttctgctgtaagatcccctcagtggagtacctggaccgccagcccacctggttc
aagaccatgatgagcgacggccatgaccacgtcactcaccacgaggtcttgccctaccac
aaccacttcatccagcacttcctgagggagcactacacagagtggatcaccaacacttac
gtcaagcccttcgtggtcatcctctacctgatctacgcctccttctccttcatgggatgt
ttacaaatcagtgatggatccaacatcgtcaacctcctagccagcaacacgcccagtgtg
tcctacgccacgacccagcagaagtacttcagtaactacagccccgtgatcggcttctac
atctatgagcccatcgagtactggaactccacggtgcaggagcacctcacaacgctgagc
cacggcttcaacaagatctcctggatggataactactttcagtatctgaaggtggtgaat
gtgagcgcctcgaccaaaagtgatttcatcaccatcctgcagggctccttcctgcgcagc
ccggagtatcagcacttcatggaggacatcattctgtccaagacagatggagatgaaatg
gagatcatcgcgtccaggatgtacctggtggcacggacgacggagaagacacgggaggag
gtggtggagctgctggagaggctccgcccactatcgctcatcaacaacatcaagtttatt
gtcttcaaccccacctttgtcttcatggaccgttacagctcctccgtagtgtcgcccatc
ctcacctcagctttcagtgtgctcaccattctcatcctcaccttcttcctggtcatcaac
cctctggggaacttctggttgatcctgaccgtcacctccgtagagctgggggtcctgggc
ctcatgaccctctggaatgtacacatggacagcatctctatcctgtgccttatttatact
ctcaactttgccatggatcactgtgcaccccacctgtataccttcgtactggccacggag
cacaccaggacccagtgcattaagatctcgctggaggagcacggggcggccattttgcaa
aatgcctgctgtttcatcattgggatgttgcccttggtgtttgtgccttccaacctgacc
tacacactgttcaagtgctccctcctcaccgcaggctgcacagtgctgcactgtttcgtt
atcctgcctgtgtttctaacgtttttccccccgtccaaaaaaaggcacaagaagaagaaa
cgggccaaacggaaagagagagagagggagcgggagatgatggagagggagagagtgagg
gaaagggaggagatagagtgcattgaagtcagggagaaccctgatcacgtgactaacgtc
tga
DBGET
integrated database retrieval system
