Oncorhynchus nerka (sockeye salmon): 115139379
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Entry
115139379 CDS
T07952
Symbol
gtf3c2
Name
(RefSeq) general transcription factor 3C polypeptide 2 isoform X1
KO
K15200
general transcription factor 3C polypeptide 2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115139379 (gtf3c2)
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIC
115139379 (gtf3c2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_WDR5
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_VPS8
HC2
Motif
Other DBs
NCBI-GeneID:
115139379
NCBI-ProteinID:
XP_029532536
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All DBs
Position
LG13:complement(13066883..13090424)
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AA seq
1079 aa
AA seq
DB search
MPVTESCTVRLLKLPLTKKSCSVNLSRLSVIKKRCSVRLSRLLVTDNWCSVRLCRLPVTK
WCSVKLSTLPVTQKRCSVRLSRLLMATIAQKLGKQGSESMGLPHGEETDQQTDPHEKPQA
EAQTNPHEKPQDTNGEAVGVSSEQGQDVPPEELPVPSSTPGNRLQRKRVPNPKYRREPDT
TNLKCPDSTKKPRKKMGLKISVVSNTETDQQEPDKKTPKPPKKTPAKKTPQKKAPQKKPV
VSSIDSDKGLIKQTPAKKTSAKKIQKETPQVNSTPAPAVPELRETPEEPETTPSGRPKRR
AAKAALQYLHTLAKEVFNQPDNGTKNDWESSPVPSPSSTQPQKRTRGKGKKRKAPDFDSD
NAAEDVDFVPENQDTEEESEAEDTQEDLDLEKRHTPLKDLRSRRISRGLSSQVRYHGNSP
NGLSNNMMGPIWMCTKTTKTFRDEHCNEWVFAEWMPSEKDWHCLSDSEAEKYLPQEMMST
AFTFSREGIREETPLHRMKRFECLPPHPERWDMLFYTGGPVWAMDWCPSPDGAPASQYAA
IYCHRNLDDQHRMNELYTKPGLIQIWDLGQLQYNTSPQSSPRLAYGIAQDKGFVWNLKWC
PGGAWELPTTNRKAPHMPRLGLLAASTSDGHITIYSLPHPDTLMARRKHTAKGGACPTLM
ICQVQGVITLKRGSFKTNHDEKNNQVLSMDWLPVKPHNILAAGFYDGTVALWNLSSKSIL
QRVRAPDRSFTLYPYHCFIAHDNATRALSFCHASSSAVFPVLPPAVLSSPYPLISSPLSS
LSSALPPPRDLMVTAGDDRLVKMWDLRRTWEPCQSFKRFLSTEAAWPLHWAGVFISQEST
YATFGQHGLNYFDSGYLGFKPLFLVPRKGTMWSLSISDWLNTAVTADSVGDVIMVLIPNL
FNNPCYLKRSIDRRFPVFRTEMVQLKEEVEENEGGVGEEGSGSTSNGTSHHTPQTYRETA
QKYYLHYHDMDMRTFKNAQSRAPWKHMQVAEAKGGPCLDLMPLASLTKVRFNPNLCAQSW
VLSGGQAGLVRAHCLRAMNSSHINKMVQESQAQFSTMFPQDTTDSQGDASAVRHTTEKL
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgacagagagttgcacagttaggctgttgaagctgcctctcaccaaaaagagt
tgctcagtaaacttgtctaggctttctgtgataaagaagaggtgctcagtaaggctgtca
aggcttcttgtgacagataattggtgctccgtaaggttgtgtaggctacctgtgacaaag
tggtgctcagtaaagttatctactctgcctgtgacgcaaaagcgttgctcagtaaggttg
tctaggctgttgatggcaaccattgcccagaagttgggcaaacagggtagcgaatccatg
ggcttaccccatggagaggagacagatcagcagactgatccacacgaaaaacctcaggca
gaagcgcagaccaatccacatgaaaaaccacaggacaccaatggggaggctgtcggtgtt
tcatctgaacaaggccaggatgtgcctccagaagagcttcctgtaccatcttccaccccg
ggaaatcgtctacagagaaaaagagtccccaatccgaaatatcggagagaaccagacacg
accaacctaaaatgtcctgactcaacaaaaaagccaaggaaaaagatgggcctgaaaata
tccgtagtctctaacacagaaactgaccagcaggagcctgacaaaaagaccccaaaaccc
cccaaaaagacacctgccaaaaagacaccacagaaaaaggcaccacagaaaaagccagtg
gtctcgagcatagacagtgacaaggggcttatcaaacagacccctgccaagaagacctct
gccaagaagatacaaaaggaaacaccacaggtcaactccacgcccgcccctgcagtcccg
gaactgagggagaccccagaggagcctgaaaccacccctagtggcagacccaagcggagg
gcagcaaaagctgcattgcagtacctccataccctggccaaggaggtattcaaccaacct
gacaatggtactaagaacgactgggagtctagcccagtccccagccccagctcaacccag
ccccagaaacgaaccagaggcaagggcaagaagaggaaggcccctgattttgacagtgac
aacgccgcagaggatgttgactttgttccagaaaatcaagacactgaggaggaaagtgag
gctgaagatactcaagaagacttagacttggagaagaggcacacaccactgaaagacctt
agatccagacgcatttccagaggtctttcaagtcaagttcgataccatggtaattccccc
aatggactgtccaacaacatgatgggacccatctggatgtgcaccaaaaccaccaagacc
ttccgtgatgaacactgtaacgaatgggtctttgctgagtggatgccttcagagaaggat
tggcattgcttgtcggacagtgaggctgagaagtatctaccgcaggagatgatgtcaaca
gccttcaccttctcaagagagggcatcagggaggagactcctctgcacagaatgaagagg
tttgagtgcctgccaccccaccctgagcgctgggacatgctattctatacgggcggccca
gtgtgggccatggactggtgcccctcccccgatggcgcccctgccagccagtacgctgcc
atctactgccacaggaacctggacgaccaacacaggatgaacgagttgtacaccaaacct
ggactcatccagatttgggacctgggacaactccagtacaacaccagtccccagtcctct
ccacggctggcctatggtattgcccaggataaaggctttgtgtggaacctgaagtggtgt
ccaggaggagcctgggagctgcccaccactaacaggaaggcccctcatatgcccagactg
ggtctcctggctgcctccacatcagatggtcacatcactatctacagcctgcctcacccc
gacacactaatggcccgcaggaaacacaccgctaaaggtggagcctgcccaacactgatg
atctgccaggtacagggtgtgatcactctgaagcggggctccttcaagaccaaccacgat
gaaaagaataaccaggttctctccatggactggctgcctgtcaaacctcacaatatcctg
gctgctggcttctatgacggtacagtggccctgtggaacctgtccagtaagtctattctg
cagcgggtgcgtgctccagaccgctccttcaccctctacccctaccactgcttcatcgcc
cacgacaacgccacccgcgccctcagtttctgccacgcatccagctccgctgtcttccct
gtcctccctcctgctgttctttcctctccttatcccctcatctcgtctcctctctcctcc
ctctcctctgcccttcctcctcctagagacctcatggtgacggcgggtgatgacaggctg
gtgaagatgtgggacctgaggaggacctgggagccctgccagtccttcaagcgcttcctc
tccaccgaggcggcctggcccctgcactgggctggggtcttcatctctcaggagagcacc
tacgccacgtttggccaacatggactcaattactttgactcagggtatctgggcttcaag
ccactctttctggtgccacggaaagggaccatgtggagcctgtcgatctctgattggctg
aacacagctgtgacggcggactcggtgggagacgtgatcatggtcctaatacccaacctg
ttcaacaacccctgctacctcaaacgatccatcgatcgcagattcccggtgttcagaacc
gaaatggtccaattgaaagaagaagttgaggagaatgagggaggagttggagaggaagga
agtggttccaccagtaacggaacatcccatcatacacctcagacctacagagagacagcc
cagaagtactacctccactaccacgacatggacatgagaacgtttaagaatgcccagagc
cgagctccgtggaagcacatgcaggttgcagaggccaaagggggaccgtgtctggaccta
atgcctttggcttcactaactaaggtccgtttcaaccccaacctgtgtgcccagagctgg
gtgttgtctgggggccaggcgggcctggtaagagcccactgcctcagggccatgaacagc
tctcacataaacaagatggtacaggagagccaggcccagttcagcaccatgttcccccag
gacacgacagacagccagggggatgccagtgccgtcagacacaccacagaaaagctgtag
DBGET
integrated database retrieval system
