Oncorhynchus nerka (sockeye salmon): 115139400
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Entry
115139400 CDS
T07952
Name
(RefSeq) vacuolar protein sorting-associated protein VTA1 homolog isoform X1
KO
K12199
vacuolar protein sorting-associated protein VTA1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115139400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115139400
Membrane trafficking [BR:
one04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
115139400
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vta1
Vta1_C
VPS35L_N
Motif
Other DBs
NCBI-GeneID:
115139400
NCBI-ProteinID:
XP_029532595
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All DBs
Position
LG13:complement(13931162..13978791)
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AA seq
314 aa
AA seq
DB search
MALPPQLKAIQHYLRTAQEHEKRDPVVAYYCRLYAMQTGMKLDSKTPECRKFLVKLMDQL
ETMKMELTDSDSITHEVVGNAHIENYALKMFLYADNEDRSGRFHKNMIKSFYTSSLLLDV
LSVFGELSEENIQHRKYARWKATYIHNCLKSGETPQAGPAGYEEETYDEEYGAEGGGGPS
SQSAQPQSPPHSQPGFRDPNQGSGSMGGPPYPPTNYNNINIPHGAHCPANTPAELPPPTA
GEAIKPVPVPRSIPVVDPSLQSATQEGDVRLTPEDYTRAQKYCKYAGSALQYEDVGTAVQ
NLQKALKLLTTGKE
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggctcttccaccacagctaaaagccattcagcactatctaagaactgcacaggaacat
gagaagagggatcctgtcgtggcttattactgtcggctttatgccatgcagacgggaatg
aaactggacagcaaaaccccagaatgtcggaagtttcttgtgaaactgatggaccagtta
gaaacgatgaagatggagctgactgacagtgactcaatcacccatgaagttgtcggcaat
gcacacatcgaaaactatgccttaaaaatgttcctctatgcggacaacgaggataggtca
ggaagattccacaagaatatgattaagtccttctacacatctagccttttgttagatgtc
ctgtcagttttcggcgagttatcggaggagaacatccagcacaggaagtatgcgagatgg
aaggccacttacatccacaactgtctgaagagtggtgaaaccccacaggctggccctgct
ggctatgaagaggaaacatatgatgaggagtatggtgctgagggtggagggggaccctcc
tcccagtctgctcagccccagtctccacctcattcccagcccggctttagggatccaaac
caggggtctgggtccatggggggtcccccctaccccccaaccaactacaacaatatcaac
atcccccatggagcccactgcccagccaacacacctgcagagctccctccacctacagca
ggagaagccattaaaccagtgcctgttccccgaagcattccagtggtcgacccctcactg
cagagtgccactcaggaaggtgacgtgcgcctcacgccagaggactacaccagagctcag
aagtactgtaagtacgccggcagtgccctgcagtacgaagacgtgggcacggcggtgcag
aatctgcagaaggccctgaagttgcttaccactggcaaagaatga
DBGET
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