Oncorhynchus nerka (sockeye salmon): 115139499
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Entry
115139499 CDS
T07952
Name
(RefSeq) DNA polymerase zeta catalytic subunit-like isoform X1
KO
K02350
DNA polymerase zeta [EC:
2.7.7.7
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
115139499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
one03400
]
115139499
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
115139499
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
B-family DNA polymerases
115139499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4683
DNA_pol_B
POL3_N
REV3_N
zf-C4pol
DNA_pol_B_exo1
FTCD_N
Motif
Other DBs
NCBI-GeneID:
115139499
NCBI-ProteinID:
XP_029532842
LinkDB
All DBs
Position
LG13:complement(18209233..18264472)
Genome browser
AA seq
3040 aa
AA seq
DB search
MFAVRIVTADYYLASPLKDLDVCYNEFRESDVKKVPVVRVFGATPAGQKTCLHLHGIFPY
LYVPYDGYGQQAESYLRQVAFSIDRALNVSMGNPSSNTQHVFKVALVSGMPFYGYHAMER
KFMKIYLYNPQMVKRVCELLQGGAVMNKRYQPHEAHIPYLLQLFIDYNLYGMNLINLGAV
KFRRSQPLREGFPPDRQGCSRPGTSPLKSPCTSRLSDSTLGGMFVRWEEDAIACSLVLEG
VEKQSTCELEVDAVAVDILNRLEIENQIGSNPGLQAIWEDEKQRRREKNQSSQMETPQSQ
DRGFVASTESERAFMQRFKEILKENEFDVTQSGSVDDAAEQQDPSPAELSLHPDVLTPDL
LQCTPANLVEAHRGSQTDTKRSRGKDQEEAIVDEEAILSLLESSQTFLPLSQKSNHSPIL
DSSQDHAMVDLLAGLEDDGYRAAPMRQNSQHSLPGGGSAHYNSDEEEEGPELEREEAELS
LLMSQRWDSDLPEQSSRRRPGVKEAEESFSDEPQDSSDEEMEWSGNNSLFANLSIPQLDG
AADENSDSSVTDKGSRTHSSLTVADKILGKRNPFPGETVHLEPPSSAKILLDRKHPEHRQ
ALSQDTEDTADKHFLSLSQHSHECSTGFKVNKEIPYIQPVKHPIPCNIANQAEVSQICVD
KMDVVRPLYTYEKKTMALDESDLDVFPFGNGKITQSRKKYSSIKNVEKNRLSILQNHRSF
SLCYSELRNCPSKTELELGQKDCKSPVPRNSINPAPCPIEEDELIASREGEMGRGSEEGD
MGELKIRYEDYQENKTERTIVAQQEAHYKFFPSVILSNCLTRPAKKVVGNKLTDGCAKLE
QAEPRRSRLKLGKRRSAAAAQKAKANAGESLGSDSQVGMALTSIMPACPKSTDTVAKSVI
EETRPTAPLPELPAPAHSPALATSPLPAPVVSPTPAPVPACPTEASVEGRLAPLPELPAK
VTGAKASGLPGSKYTLRAKRKMSYDSSEDGEHSGTSRVKHPLALRDNYVRFKDNYILSTQ
ELKYQKRRKMSRKEPREPPIIIKYIIINRFKGQKNMLVKMAKVSAEEQRVVLTPDKLETY
TKMAPLKSFWPKVLESCAVKFPLSEPKANKKQPKRKVNKVNTTTTKKTASGPPKPRVRVR
QGGERPRRTKGLRKASTRPSLPCPRPCYCELANDHATEYSDVMVELGYLSERSPSPTDST
PPRCWSPSDPLMEAMSSDGLMNPLNDPCLSSVCQETPPESLGRGVRNRSRTAKPSSPRRR
TKSANKLSAEVKKESATRRKSTTGTPRKRKKDLETVDGTSVGGDSTNTTTRTRRPRRKKQ
AEQPPVKSRDCDSSQLLFPEDVSPPTESSSKAVPPFQQSANKTSQIIDGSHGVTGSKSLS
QFIEPKSENYETSIMEVNQSFALKLFQTHPGQLPGCAVKAETTVDECTPPQVKSPMVGKS
KGAPKSGSPHSGLRNGEALPEDTSGLAVLKKLLQKRQQRGGQCLPTQTVGTEISSSTTTQ
PPGPTPDPAAAKPPRARKTPSATPRKPRVSRTTTPKEKKPRSRKGKANSQPELPVKQEPP
MSDDSPVFLSDPGLDSCYSIEDSLSPELPHNYNFDINAIGIGSQTEFSSLYMGSQFVLTD
KNLPQKFLSDITQEAIPALALSIEKRPDRLSGSGEVLQRSLSGPLSPDLFDKPENGESVS
NHLSSLDSERLLRSREWGTSLGKLHGLSHFQGFHCERKELLFSAFDPVLPLPLSSASFAD
NEGSPTGDLLEGNDALTSTTASSSPRSVNSVSQVKTSSQLLRGTGGGAHILKPLMSPPNR
EEILTTLLDLEMSEATFQEPFCSNPSDAPGKPREVGGRKLTVETRLAKELAEFNGDLSLE
GLHFWKTAFSAMTRPGSSHTLGAEATRDQAQLSPSSAGDQKVILLPCRSAPSRERVQLWL
EARKQYEHLQRGRRDMGALERGRLEQIREEQQTDRTEQPTLLHCPALKEEEGFEKPSDIR
TQRDNLSLHISPVEGVETQDSPRGVKPVSDINTRDSEEECYGKSISPDSPDLPPWQQPTQ
PSPSGLDGVEVERRGSDLGSPLSPRLCTSPERSEEKHFLSPSPLPSTKSRGDRERTSPHL
QLHSTPVLRRRRCRGESEPVCSTPLTEDAESPSQRLQHRRGEHTDTLRRVLLTTQMKNQF
AALNVAKKDNSQIEGPSISNSYGFKVSMQNLQDAKALHEVQHLTLMSMELHARTRRDLEP
DPEFDPICALFYCFSSDAPLLDSDKTQLTGAIVVDKDCQDSGQGVRGTAPLLVRSGVSGL
QVTYAVDEKRLFQEVVTLMRRFDPDMLVGYEVQMRSWGYILQRAAALNFDLCQQLSRVPG
DAKENRFAAERDEYGADTMTEIHIIGRIVINLWRIMKTEVTLNNYSFENVAFHVLHQRFP
LYSPRTLSDWFDHNTDLHRWKMVDYYVSRLGGTMQLLQQHDIIGRTSELARVFGIQFYHV
LTRGSQYRVESMMLRVAKPMNYIPVTPSIQQRAQQRVPQCIPLVMEPESRFYSNSMVVLD
FQSLYPSIVIAYNYCYSTCLGHVESMGTPDEFKFGCTSLRVPPELLYQLRNDITISPNGI
AFVKPTVRKGVLPSMLDEILNTRFMVKRSMKTYKQDKALMRLLDARQLGLKLIANVTFGY
TAAHYSGRMPSVEVGDSIVHKARETLERAIKLVNDTKKWGAHVVYGDTDSMFVLLKGATK
EQAFKIGNEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYESLDQKDPVFDAKG
IETVRRDGCTAVSKILERSIKLLFETRDISLVKQFVQRQCVKVLEAKASMQDLTFAKEYR
GSGSYRPGACVPALELTRRMMAYDRRLEPRVGERVPYVIVYGTPGVPLIQLVRRPLEVLQ
DPGLRLNATYYITKQILPPLRRIFQLIGVDVLSWYQELPRVQKASCSMVARGEEVGRKGT
ISQYFTTLHCPVCDELTQLGVCASCRAEPQRVAVTLYQDMRLWESQQDQLLKICRNCSGS
AERQVPCVSLDCPVLYKLSRVNRQLTKAPYLRQLLEQFGL
NT seq
9123 nt
NT seq
+upstream
nt +downstream
nt
atgtttgctgtccgcatcgtcaccgctgactactaccttgcaagtcccctcaaagacttg
gacgtctgttataacgaattcagagaaagtgacgtgaagaaagtaccagtggttcgagtt
ttcggggcaacaccagcaggtcagaagacctgtctccacctccatggcatcttcccctac
ctctatgtgccgtacgatggctatgggcagcaggcggagagctacctgcgtcaggtagcc
ttcagcatcgacagggccctcaacgtgtccatgggaaacccctcctccaacacacagcac
gtcttcaaggtggcactggtctccggcatgcctttttatggataccatgccatggagagg
aagtttatgaagatctatctgtacaatcctcagatggtcaaaagggtgtgtgagctgtta
caaggaggcgctgtgatgaacaagcgctaccagccccacgaggcccacatcccctacctg
ctgcagctgttcatcgactacaacctgtacggcatgaacctgatcaacctgggagccgtc
aagttccgccggagccagccgctcagagagggatttcccccagatcgccagggctgcagc
aggccaggaaccagccccttgaagagcccctgtacctccagactgagcgacagtacgctg
ggaggcatgtttgtccgctgggaggaggatgccatagcctgttccctggtcctggagggt
gtggagaaacagagcacatgtgagctggaagtggatgccgtggctgtagacatcctcaac
cgtctggaaatagagaatcagattggcagcaaccctggcctgcaggccatctgggaggac
gagaagcagaggcgacgagagaagaaccagtcatctcagatggagaccccacagtcacag
gatcgtgggtttgtcgcctcgacggagagcgagagggccttcatgcagagattcaaggag
atcctgaaggaaaatgagtttgatgtgactcagtctgggtctgtggatgacgcggcagag
cagcaggatccatccccagctgaactgtctctacaccctgatgtcctgaccccagacctg
ctgcagtgtacaccagccaacctggtggaggcgcatagaggctcccagacagacactaaa
aggagccgtggtaaagaccaggaggaggccattgtggatgaggaggccattctgagtctg
ttggagagcagtcagacctttctcccactctcccagaaatccaaccactcacccatacta
gacagcagccaggaccatgccatggtggacctgctggcaggcctggaggatgatgggtat
cgggcggcccctatgaggcagaactcccagcattccctgcccgggggagggagcgctcac
tacaacagtgatgaggaggaggaggggccagagctagagagggaggaggcagaactcagt
cttctgatgtcacagagatgggacagcgaccttccagaacagtcttctagacggagacct
ggtgtgaaggaggcagaagagagcttcagtgacgagccccaggactcgtcagatgaggag
atggaatggagtgggaacaactctctttttgccaacctctccattcctcagctggacggt
gctgcggatgagaacagtgattcatcggtaacggacaaaggctccaggacccactcgtcc
ctcaccgtcgccgataagatcctggggaagaggaacccctttcctggggagacagtccac
ctggagcccccgtcttcagccaagatcctcctagaccgcaaacacccggagcaccggcaa
gccctctcacaggacacagaggacacagctgataagcacttcctctccctcagccaacac
agtcatgagtgttccacagggttcaaggtgaataaagagataccttacatccagccggtc
aaacaccccattccctgcaacatcgccaaccaggccgaggtctctcagatctgtgtggac
aaaatggacgtcgttcggcctctgtacacctacgagaagaagacgatggctctggatgag
tcggatctggacgtctttccgttcggcaacgggaagatcacccagagcaggaagaagtac
agcagcatcaagaatgtggagaagaatcgtctgtccatcctgcagaaccacaggagcttc
tccctgtgttactctgagctgaggaactgccccagcaagacagagctagagctgggtcag
aaagactgtaaaagccccgtaccgaggaacagtataaacccagccccctgccccatagaa
gaggacgagctcattgcctcgagggagggtgagatgggccgaggcagcgaggagggggac
atgggcgagctgaagatccggtacgaggactatcaggagaacaagaccgagaggaccata
gtagcccagcaggaggcacactacaagttcttccccagtgtcattctctccaactgcctt
accaggcccgccaagaaggtggtgggcaacaagttgactgacggctgcgccaagctagag
caggcagagccacgcaggtccaggctaaagctgggcaagaggaggtcggcagcagcagcc
cagaaagctaaagcgaacgctggggaaagcctaggctctgacagccaagtgggcatggcc
ttaacgtccatcatgcctgcctgtcctaagagcacggacacagtggcaaagtcagtcata
gaggagactagacccacagcaccactcccagaattgcctgctcctgcccattcccctgcc
ctggccacttcccctctaccagcccctgtcgtgtcccctacaccggccccagtccctgcc
tgtcccactgaggcgtctgtggagggcaggttggccccactgcctgagctccctgctaaa
gtgaccggcgccaaagcctcaggtctgcctggcagcaagtacaccctgagggccaagcgc
aagatgagctacgacagcagcgaggacggggaacactcgggcacctctcgcgtgaaacac
cctctggccctccgagacaactacgtccgcttcaaagacaactatatcctcagcacgcag
gaactcaagtaccagaaacgacggaagatgtccagaaaggagccaagggagccacccatc
atcatcaagtacatcatcatcaacaggttcaagggtcagaagaacatgttggtgaagatg
gccaaggtgagtgctgaggagcagcgggtggtgctcacaccagacaaactggagacgtac
actaaaatggcccctctcaagtccttctggcctaaggttctagagtcttgtgcggtcaag
tttcctctcagtgagcccaaggctaataagaaacagcccaaacgaaaggttaataaggtc
aacaccaccaccactaagaaaacggccagtggcccacccaaacctcgagtccgagtcagg
caggggggcgagaggcctagaaggactaaaggcctcaggaaagcctcgactcggccctct
ctgccgtgcccgcggccatgttactgtgaactggccaatgaccacgccactgagtactct
gatgtgatggtggagttgggttatctgtctgagagatcccctagccccactgattcaacc
ccaccccggtgttggtcccccagtgacccccttatggaagccatgtcctctgatgggttg
atgaacccattaaatgatccctgtctcagttctgtgtgtcaggaaacccccccagagtcc
ttaggccgaggtgtgcggaaccgaagccggactgctaaacctagcagcccaagaagacgg
actaagtctgctaataagctttcggcggaagtcaaaaaggagagtgccacgagaaggaaa
agtactactgggactccacggaagagaaagaaagatctagaaactgttgatgggacgagt
gtgggtggtgactctactaacaccaccacaagaactcgaaggcctcgtaggaagaagcag
gctgaacagccccctgtaaaaagcagagactgtgacagttcccagctcctcttcccagag
gatgtgtcgcctcctactgaatcctcttcaaaggccgtaccaccctttcagcagtcagct
aacaaaaccagccagatcattgacggctcccatggggtcactggctctaaatccctatcc
cagttcattgaaccaaagtccgagaactatgagacctccataatggaggtgaaccaaagc
tttgctctcaaactcttccaaacgcatccaggccagctgccgggttgtgctgtgaaggca
gaaactacagttgatgagtgcacaccccctcaggtgaaatcccccatggtggggaagagt
aagggcgcccccaaatcagggtcccctcactcaggccttaggaacggggaggccctacct
gaggatacctctggcttggctgttctgaagaagctcctgcagaagaggcagcagagaggt
ggtcagtgcctcccaacccagacagtgggcacagagatctcctcctccactacaacacag
ccccctggccccacaccagaccctgctgcagccaagccaccaagagccaggaaaactccg
tcagccaccccacggaaaccccgggtctcaagaactacaactcccaaggagaagaagccc
agaagcaggaagggtaaggcgaactctcagccggagttacctgtgaagcaggagccacca
atgtcagacgacagcccagtgttcctgtcagacccaggcctggacagctgctactccata
gaggacagcctctccccagagctcccacacaactacaacttcgacatcaacgctattggc
attggcagccagacagagttctccagcctgtacatgggcagccagtttgttctgaccgac
aagaatctgcctcagaagttcctgagtgacatcacccaggaggccatccctgcgctggcg
ctgagcattgagaagaggcctgataggctgtctgggtctggggaggtgctccaacgaagc
ttgtctggacctctgagtcctgacctctttgacaagccagaaaacggtgaatctgtctcc
aaccatttatcttctctggattccgagaggttactgaggagcagagagtggggaacgtcc
ctgggcaaactccacggcctcagccacttccagggctttcactgtgagaggaaagagctg
ctgttctctgccttcgaccccgtcttaccgctgcctctgagctctgcgtctttcgcagac
aacgaaggatcaccgaccggagacttactggaggggaatgatgctttgacgtcgaccacg
gccagtagttctccgcgctcggttaactccgtatcccaggtgaagaccagcagccagctc
ctcagggggacaggagggggagcccacatcctcaagcccctcatgtcccctcccaaccgg
gaagagatcctcaccaccctcctggacctggagatgtctgaggccacctttcaggagccc
ttctgcagcaacccctcagacgctccagggaaacccagggaggttggtggacgtaagttg
acggtggagaccaggttggccaaggagctggctgagttcaacggggacctatccctggag
gggctacacttctggaagactgccttctccgccatgacccggcccggctcctctcacacc
ctgggagcagaagccaccagagaccaggcccagctcagcccctcttcagccggggaccag
aaggtcatcctgctgccctgtaggagcgcccccagccgcgagcgcgtccagctatggctg
gaggccaggaaacagtacgagcatctgcagaggggcaggagagacatgggagcattggag
aggggaaggttagaacagataagagaagagcagcaaactgacaggactgaacagcccact
ctgctccattgtccagcattgaaggaagaggaggggtttgagaagccctccgatatcagg
actcagagggacaatctctctctacatatatcacctgttgagggggtggaaactcaggac
agccccagaggagtgaagcctgtatcagacattaacaccagagactctgaggaggagtgt
tatggtaaatccatctctccagactcgccagacctaccgccctggcagcagcccacgcag
cccagcccctcaggactagatggagtagaggtggagaggagagggtcagatctagggtca
cccttgtcccccaggctctgcacctccccagagaggagcgaggagaagcacttcctcagt
ccctctcccttgccttccacgaagagccgaggggacagggagaggaccagcccccacctt
cagctccacagcaccccagtcctcaggagacgcaggtgcaggggcgagtcggaacccgtg
tgcagcacccctttgactgaagacgcggagtccccgtctcagagactgcagcacaggaga
ggggaacacacagacaccctgaggagagtgctactcaccacacagatgaagaaccagttt
gctgctttgaacgttgcaaagaaagacaactctcagatcgagggccccagcatcagcaac
tcgtacggcttcaaagtcagcatgcagaacctccaggacgctaaagccctgcacgaggtg
cagcacctgacgttgatgagcatggagcttcacgctcgaacccggcgggacctggagccc
gaccccgagtttgaccccatatgtgccttattctactgcttcagctctgacgcaccccta
ctggactcagacaagacgcagctgactggggccatcgtggtggacaaggactgccaggac
agtggccaaggtgtcagaggaacagcacccctgctggtcagatctggggtctcaggactg
caggtcacctacgctgtggatgagaagcggctgttccaggaagttgtcactctcatgagg
aggtttgacccagacatgctggtaggctatgaagtccagatgcgttcctggggctacatc
ctccagcgggcagcggcactcaactttgacctttgccagcagctctccagggtgccaggt
gacgccaaggagaaccgtttcgccgcggagagggatgagtacggagcggacaccatgacg
gagatacacatcatcggccgcatcgtcatcaacctgtggaggatcatgaagaccgaggta
acgttgaacaactacagttttgagaatgtggccttccacgtcctacaccagcgcttcccc
ctgtacagcccccgcaccctgtcggactggttcgaccacaacacggacctgcacaggtgg
aagatggtggactattatgtgagccggttgggcggcaccatgcaacttctccagcagcac
gacatcatcggcaggaccagcgagctggccagggtgttcgggatccagttctaccacgtg
ctcaccaggggatcccagtaccgtgtggagtccatgatgctgcgcgtggccaagcccatg
aactatatccccgtgacgcccagcattcagcagagagcccagcagagggtgccgcagtgc
atcccgttggtcatggagcctgagtcgcgcttctacagcaactctatggtggtgctggac
ttccagtcgctctacccctccatcgtcatcgcctacaactactgctactctacctgcctg
ggccacgtggagagcatgggaacgcccgatgagtttaagtttggctgcacctccctgcgg
gtcccccctgagctcctctaccagctccgcaatgacatcaccatctctcccaacggcatc
gcttttgtcaagcccacggtgaggaagggggtcctgcccagtatgttggatgagatcctg
aacacgcggttcatggtgaagcgctccatgaagacttacaagcaggacaaggccttgatg
aggctcctggacgccaggcagctgggactcaagctcatcgccaacgtcaccttcggctac
accgccgctcactactccggacgtatgcccagcgtagaggttggagatagtattgtccac
aaggccagggaaaccctggagagggccatcaagctggtcaacgacaccaagaagtgggga
gcccacgttgtctatggtgacacagacagcatgtttgtcctgctaaagggagcgactaaa
gagcaggccttcaagatcggcaacgagatcgccgaggcggtgactgctaccaaccctaaa
cctgtcaagctgaagtttgagaaggtgtacctcccgtgcgtgctccagacgaaaaagcgc
tacgtgggctacatgtacgagagcctggaccagaaggaccccgtgtttgacgccaagggg
atcgaaactgtgcgccgagacggatgcactgctgtttccaagattttggagcgttccatc
aagctgctgtttgagacgcgggacatcagcctggtgaagcagtttgtgcagcgtcagtgt
gtgaaggtgctggaggccaaggccagcatgcaggacctgaccttcgctaaggagtacagg
ggcagcggctcctaccggccgggggcctgcgtccctgctctggagctcaccaggcgtatg
atggcttatgaccggcgcctggagccacgggtgggcgagcgggtgccctacgtgatcgtg
tacgggacgcccggcgtgcccctcattcagctggtgcggcggcccctggaggtgctgcag
gacccgggcctgcgcctcaacgccacctactacatcaccaagcagatcctgcccccgctg
aggcgcatcttccagctcatcggtgtcgatgtgctcagctggtaccaggagctccccagg
gtccaaaaggcgtcatgctccatggtggcccgaggggaggaagtggggaggaaggggact
atctcccagtacttcaccacgctgcactgtcctgtgtgtgacgagctcacccagctaggg
gtgtgtgccagctgccgtgctgagccccaacgcgtggccgtcactctctaccaggacatg
cgcctttgggagagccagcaggaccagctgctaaagatctgtcggaactgcagcggcagt
gcggagcggcaggtcccgtgtgtgtctctggactgtccggtgctctacaagctgtcccgg
gtcaacagacagctcaccaaggccccctacctccgacagctcctggagcagttcggattg
tga
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integrated database retrieval system
