KEGG   Oncorhynchus nerka (sockeye salmon): 115139508
Entry
115139508         CDS       T07952                                 
Name
(RefSeq) histone deacetylase 2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03082  ATP-dependent chromatin remodeling
one03083  Polycomb repressive complex
one04110  Cell cycle
one04330  Notch signaling pathway
one04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    115139508
   03083 Polycomb repressive complex
    115139508
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    115139508
   04350 TGF-beta signaling pathway
    115139508
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    115139508
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:one03036]
    115139508
Enzymes [BR:one01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     115139508
Chromosome and associated proteins [BR:one03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     115139508
   HDAC complexes
    Sin3A-HDAC complex
     115139508
    BRAF-HDAC complex
     115139508
    REST complex
     115139508
    SHIP complex
     115139508
    MiDAC complex
     115139508
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     115139508
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    115139508
  Chromatin remodeling factors
   NuRD complex
    115139508
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 115139508
NCBI-ProteinID: XP_029532856
LinkDB
Position
LG13:complement(18681612..18689894)
AA seq 468 aa
MAYTVAGGTKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ATAEEITKYHSDDYIQFLQSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGST
AGSVKLNRQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYVDIDIH
HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGVDDESYE
LIFKPVMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIRGHAKCVEYIKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDTEIPDELPYNDYFEYFGPDFKLHISPSNMTNQNTLEY
MDKIKQRLFENLRMLPHAPGVQMQTVPEDAITDDTVDEDAEDPDKRMSIRASDKRIACDE
EFSDSEDEGEGGRRNEANHKKGTKRTRVEEGDKEKVEVEKSKETSTEN
NT seq 1407 nt   +upstreamnt  +downstreamnt
atggcttacaccgttgcaggtggaaccaagaagaaagtctgctactactatgacggtgac
attggcaattactattatggacaagggcatcccatgaaaccacaccgaattcgaatgacc
cacaacctactgttgaactatggactgtacagaaaaatggaaatatatagaccacacaaa
gccactgcagaggaaattaccaaataccacagtgacgattacatccagttcctccaatcc
atacgaccagacaacatgtcagagtacagcaagcaaatgcagcggtttaatgttggtgag
gattgtcctgtatttgatgggttgtttgagttctgccagttgtctaccggtggctctact
gcgggatcggtgaaactcaacaggcagcagacggacattgcggtgaactgggccggggga
ctccaccacgctaagaagtctgaggcctctggcttttgttacgtcaatgacattgtgttg
gccattctggaactcctcaagtaccatcagagggtactgtacgtagatattgacatccac
catggggatggagtagaggaagccttctacaccacagacagggtcatgactgtgtccttc
cacaaatacggagagtacttccccgggactggagacctcagggatattggtgcaggaaaa
ggcaaatactacgctgtcaacttccccctgagggacggcgttgacgatgagtcgtatgag
ctgatcttcaagcctgtgatggccaaggtgatggagatgtaccagcccagtgcagtggtt
ctgcaatgtggagcagactccctctcaggagaccgactgggctgcttcaaccttaccatc
cgcggccatgctaagtgtgttgagtacattaagtcgttcaaccttcccctactaatgctg
ggtggcggaggttacaccatccgcaacgtggcccgctgctggacctacgagactgccgtg
gctctggatactgagatccctgacgaactgccatacaatgattactttgaatactttggg
cctgacttcaagttgcacatcagcccatccaacatgaccaaccagaacacgttggagtac
atggataagatcaagcagcgtctgtttgagaacttgcggatgctacctcacgccccggga
gtgcagatgcagacggtccctgaagacgccatcactgacgatacggtggatgaggatgca
gaggaccccgacaaacgcatgtccatccgtgcttcagacaagaggatagcctgcgacgag
gagttctccgactctgaggacgagggagagggaggaaggaggaacgaagccaatcacaag
aaaggaacaaaacggactcgagttgaggagggagacaaagagaaagttgaggtggagaaa
tcgaaggaaacaagcactgagaactga

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