Oncorhynchus nerka (sockeye salmon): 115139625
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Entry
115139625 CDS
T07952
Name
(RefSeq) 5'-3' exoribonuclease 2-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03008
Ribosome biogenesis in eukaryotes
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115139625
09123 Folding, sorting and degradation
03018 RNA degradation
115139625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115139625
03019 Messenger RNA biogenesis [BR:
one03019
]
115139625
03009 Ribosome biogenesis [BR:
one03009
]
115139625
03016 Transfer RNA biogenesis [BR:
one03016
]
115139625
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115139625
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
115139625
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
Pre-60S particles
RNases
115139625
Transfer RNA biogenesis [BR:
one03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
115139625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
115139625
NCBI-ProteinID:
XP_029533085
LinkDB
All DBs
Position
LG13:29013766..29044226
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AA seq
952 aa
AA seq
DB search
MGVPAFFRWLSRKYSTIVVHCTEERSKECNGVRIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKAAPKNEDEMMVAIFEYMDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKSRIREEILGRGGYLPPDEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLSNDPGWRNITVILSDASVPGEGEHKIMDYIRRQRAQPHHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCAMCGQKGHEIKDCQGVAREKQGEHDEFADAMPASEQE
FIFIRLCVLREYLERELTMASLPFPFDFERTVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYITENGFVKLESVELIMQAIGVAEDNIFKKRKEDDEGFKRRNKE
KKKRMKAQQQGPSYLTSGQFAPQALGGRGRPEVVQNARHQAFDMRMQGRDQQNRAGTSDG
QDGRGVKRKAEDSDSEPDPEDNVRLWEDGWKQRYYKTKFDVDATDDDFRKKVVMSYVEGL
CWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFTDFELGTKPFKPLEQLMGVFPAAS
GNFLPETWRSLMSNPESSIIDFYPDDFAIDLNGKKYAWQGVALLPFVDERRLRAALAEVY
PNLSPEENKRNSLGSDMLFVGKSHSICDFIQELYRGESHEGTEMPAELCHGIQGILNLDG
DPILPDKPVESPIPMLRDIAQNSAIGVKYKDPQFGETFVFKAVILHGAKIPAKVLKPGDW
ERGNRGRGNWRPQLGFNSNRQQVHLDQSAFRALGHSINRQQQGGGQYSNAPPPGNYHQGN
YSRPPHSGGGHFSHSRQQGLLGAPPPFNPVQQYPRQQYSGSGGHGWDRSMQSQGAAYQQN
MQRGGQGQGGYQQQRGQDDRRGDRRDDRGGQPGHSAGRNYPLPPPARRYNWS
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcattttttcgttggttgagtcggaaatattctacgattgttgtccat
tgcaccgaggagaggtccaaggaatgcaacggtgtacggattcctgttgataccagcaaa
ccgaatccaaatgaagtggagtttgacaatttgtacttggacatgaatgggatcattcac
ccctgtacacatcctgaagacaaggctgcacccaaaaatgaagatgaaatgatggttgcc
atctttgaatacatggatcggctcttcaacattgtgcggcccagaagggttctttacatg
gctattgatggagtggcccctcgtgccaaaatgaaccagcagcggtcaaggcgattccgt
gcctccaaggaaggagtggaactggttgaggagaaatcccgcatccgagaggagatcctc
gggagaggagggtatcttccacctgatgaaatcaaggagagatttgacagtaactgtatc
accccaggcacagagttcatggacaaccttgcaaagtgtctccgttactacattgcagac
agactcagtaatgaccctggatggcgtaacattacagtcatattgtctgacgccagtgtc
cctggtgagggggagcataagatcatggactatatcaggcgacagagagctcagcctcac
catgaccccaacacacaccactgtctttgtggagctgacgctgaccttatcatgctgggc
cttgccactcacgagcccaatttcaccatcatccgagaggagttcaagcccaaccagccc
aggccctgtgctatgtgtggacagaaaggccatgagatcaaggactgccagggagtggcc
agggagaaacagggagagcatgatgagtttgcagacgctatgccggcttctgaacaggag
ttcatattcatcaggctgtgcgttttgcgtgagtacctggagcgagagttgacaatggcc
agtctgccctttccctttgactttgagaggactgtcgacgactgggtcttcatgtgcttc
ttcgttggcaacgatttcctgcctcatttaccgtccttagagattagagagggtgcgata
gatcgactggtgggcatctacaaagacgttgtgcacaagactgggggctacatcacagag
aatggctttgtcaagttggagagtgttgagttgatcatgcaggcaatcggtgtggctgag
gacaacatcttcaagaagcgcaaagaggatgatgagggattcaagcgaaggaataaggag
aaaaagaagaggatgaaggctcagcagcagggcccatcctacctgaccagcggtcagttt
gccccccaggcccttggcggcagaggcagacctgaggtggttcagaatgcccggcaccaa
gccttcgatatgcggatgcagggcagggaccagcagaacagggctgggaccagtgatggg
caggatggccggggtgtgaagcggaaagcagaggacagcgacagcgaaccagatcctgaa
gataatgtcaggttgtgggaggatggctggaagcagcgatactacaagaccaagtttgac
gttgacgcgactgacgatgattttcgcaaaaaggtggtcatgtcgtacgtggagggtctc
tgctgggtcctgaggtactactaccaggggtgcgcatcctggaagtggtacttcccgttc
cactacgccccgtttgcctcagacttcaaagacatcaaaggcatgttcaccgacttcgag
cttgggaccaagccgttcaagcccctggagcagctgatgggtgttttccctgctgccagt
ggaaatttcctgcctgaaacatggcggtcactcatgagcaatccagagtcctcaatcatt
gacttctaccctgatgactttgccattgacctgaatggaaagaagtatgcttggcaaggc
gttgcattgcttcccttcgtggatgagcgccgtctcagggcagccctggctgaagtctac
ccaaacctctctccagaggaaaacaagaggaacagccttggcagtgatatgctgtttgtg
gggaagtcccattctatctgtgacttcatccaggaactgtaccgtggagaatctcacgag
ggcaccgagatgccggcggaactatgccatggaattcaaggtatattaaatcttgacgga
gaccctatcctaccagataaaccagtggagtctcccatccccatgctacgggacattgca
cagaacagtgccattggagtgaaatataaggacccacagtttggagagacctttgtgttc
aaggctgtcattcttcatggagcaaagattcctgccaaggtgctgaagcctggagactgg
gagaggggtaaccgtggtaggggtaactggaggccccaactgggcttcaactccaaccgg
cagcaggtccatctggaccagtcagccttcagggccctgggtcacagcattaaccgacag
cagcagggaggtgggcagtacagcaacgctccaccccctggcaactaccaccaggggaac
tacagcaggcccccccacagtggtggtggtcacttctcacattccaggcagcagggtctt
ctaggggcacctcccccattcaaccctgtacagcaatatccaaggcagcagtatagtggt
agtggtgggcacggctgggaccggtcgatgcagtcccagggagctgcctaccagcagaac
atgcagagaggggggcagggtcagggtggctaccaacaacaacgtggtcaggatgaccgt
agaggagaccgcagagacgaccgtggaggacaaccgggacacagcgctggacggaattac
cccttgccacccccagcaagacgatacaattggagttaa
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