Oncorhynchus nerka (sockeye salmon): 115139633
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Entry
115139633 CDS
T07952
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115139633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115139633
03021 Transcription machinery [BR:
one03021
]
115139633
03036 Chromosome and associated proteins [BR:
one03036
]
115139633
Transcription factors [BR:
one03000
]
Eukaryotic type
Helix-turn-helix
ARID
115139633
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115139633
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115139633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
115139633
NCBI-ProteinID:
XP_029533097
LinkDB
All DBs
Position
LG13:29435294..29551797
Genome browser
AA seq
2296 aa
AA seq
DB search
MAAQVATAPTSNGKKRSNLASSLSQDLKSGKSGVVGGAVLGVGNGTIVHAMNNVERHELN
PTSRARASPANNDSNPREKESRDSRSASFSTSNSSMEAGMFVSHKVKNVGGEDTPSLHHT
PPQQQPFNQFLQHQQRQIQNNNQQSLHGESGNRQHGESGNRQHGGKGNVVLGNTVERHQQ
QEMLNKNEDDQPSKTEDRLDSRYEHASSGPTNNNINPSQSGTSSVSEFNSYYGNGKGGPC
FDQHGGQQSPGSGIMHSVQQNMDQVQQNSHEGYHNNPYNHYPTYRPGYGNSGYGMMSPSR
QGNNMMGLGSNTSAANHSKAAMAAASSGGANVGGFQRFPGQTQQHPSGATPTLNQLLTSP
SPMMRGYGGGYQDYTNPSAQQQQSSMGLTKDINPQYGSVTHVWGGQQRNHPAMSPGNNGQ
GSGRSQVPPMDAMAMKRSQLYGIGNNPYSQQQQGGGGSYPGQPYGSPSPHRYPMGMHGRG
QVGMSGMQYPQQQQQMVAQYGQQHQGQQGGYCQPQGQSPYFSPPQQQPTAPTQPPYMQPR
PPPPPQQDVSQEGYGNRGQSAMTPGKPNHEEMGLSQQDRPSSLPDLSGTIDDLPTGTEVA
VSSAVSASGSTSSQGEQSNPAQSPFSPHVSPRLPGLRSGPSPSPVGSPVGSSQSRSGPIS
PASVPGTQMAPQTPGNMSDVGSHSTLSQSPMSQERGFPPAMQRNTPGPQQSGQGPPVSPH
PSLGGSMHPGSYHQQQQGGPGPSYGSQTSQYGPQGNYPRPPNYGGAPSANYSGPGPGMSN
SLGMNASSPMHGQGPGQPCGSMPAGRGLGPGASGRPYPCATTNTMAPTSPSMPQPAGQGQ
GMRPPLPNVNRKPGHEAGPGPNAMQGPNAGSNPSAQGRQGMTPMPHHPGMNPMGPGGVGP
SPGGLYSQQPGANTSGRMTPQGPHPLYNAPPPSGPMQMGGEGMVGPPDPKRRPPEQHREG
NTPAPAVEPPPKPKDRYSSSQCMSQPPTPCPLSPSPASLSSCHGAQDSRDIISSHPAGAW
PKTPTSPKPSPATMTNEKIRILYEMGGEPERRMWVDRYLAFMEERGTPVPMLPAVGKKPL
DLCRLYLSVREIGGLAMVNKSKKWRELSTHLNVGTSSSSASSLKKQYIHYLFAFECKVER
GEEPPLEIPGETKKQAQAHQARIQPPSPANSGSLQGPHTPQSTGSSSMSEMPEGMKRPTP
ATTPHGHMTPQPGNRNSGGIRVQDPFSEISDPAFHKRGPMPSGAPYQQSGGSSDPSMRMQ
YDANKDLYGGPQKGPGGSESYGPGQMPSGAVQDMYPRGPPSGAMPGMGMGPGPRPQYPYG
PGYDRRPDHVMGPEGGMAPPGGQNNMGPSSGDPSMYSANRYPQQRPHGHESYGQQQYPHG
PMPYGSHQPGMYPQQQGYKRPVGPEVMYGPPAKRHEGEAYGMQQYGGQQPGMYSQYGGNY
MGPERRPMQGQYPYPYSRDRMGATQGPQQHAMMSGGPPASSGASAEGPQLNMWHPRTDMG
YPGPYRGQLGQGPPYPGLGRGPGDDPEGRNSPDGLWPPGPPGQHQPPYPPHSSSASSMPP
MASRQPTSSYQSNPAMANHISRAPSPSPFPRPMGGSGPLSPNNGGPYMASLKKAGMPGSM
PGSLGGGMSGQGILPLHRDISFPVGSVEATLPKLKARRRLTSKETGTPEAWRVMMSLKSG
LLAESTWALDTINILLYDDNTVSSFTLAQLPGFLELIVEYFRRCLISIFGILDEYEVGTE
GQRTLLGPIADQEEEPTVPELGSQLREEQRDNRLEEAEIEKPTANGSTEEAVPDEKTEEP
VEVTVKEEKVEGEESEVGATTEQSEPPQPEGPPEPRPKQASKYDKLPIKVEEKSAEEDQV
EERQGLSLPRGFNSGLLHWKAGGGDSTAHIQTHFEKRREETDSKHTEERKVEEGAVVEKT
MTETATVDDMLSARPGSQSLSERNDLTGTFSFVGGAQTQSPILTLLEDEPRCWDEAPLST
AEPWQDALARRCVCVSNIVRGLSFIPGNDNDMSRHPGLVLILGRLVLLHHLHPQRRRTPP
SYQREEEQGRACSKDEWWWDCLSALRENTLVTLANISGQLDLSLYPESICLPVLDGLLHW
MVCPSAEAQDPFTTAGCSSSLTPQRLVLECLCKLSIQDNNVDLLLATPPFSRQEKLYATL
VRHVGERKSQVCREMAVAVLSNLAQGDPTAARAIALQKGSVGTLIGFLEDCVAMAQHQQG
PHSLLHPAPVPHPEPPSVNMMCRAAKALLAMAKVKENRPEFVLYESRLLDSSLSSVLSSA
VAAIMCEVLFKIGRSS
NT seq
6891 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacaagtggcaacagccccaacatcaaatggtaagaaaaggtcgaatttagct
agtagcttgagtcaagatttgaaatctggcaagtctggagtagttggtggagctgtgctt
ggggtaggaaatgggactatcgttcatgctatgaataatgtagaacgccatgaactgaac
ccgaccagtagagctcgagcttctcctgcaaacaacgattcgaatccacgtgagaaggaa
agtagagattctagatcggcgtctttttcgacttcaaattctagcatggaggcgggaatg
tttgttagtcataaagtgaaaaatgttggtggtgaagatactccatctctccaccacaca
cctcctcagcaacagccattcaaccaattccttcagcaccaacaacgccaaattcagaac
aacaaccagcagtcgctacatggagaaagtggaaaccgccaacatggggaaagtggaaac
cgccaacatggaggaaaagggaatgttgttttagggaatacagtcgaacgccatcagcaa
caggaaatgctgaataaaaatgaggacgaccaaccgagcaaaacggaagaccggttggac
agcaggtacgagcatgccagttcgggaccaacaaataacaacatcaacccgtcccaaagt
ggtaccagctcggtttcggagtttaatagttattatggaaatggtaaaggagggccttgc
tttgatcaacatggcggacaacaaagccctgggtctgggataatgcattcggtacaacag
aatatggatcaagttcaacaaaactcccacgaagggtaccacaacaacccgtacaaccac
tacccgacttaccgacctggctacggtaatagtggatatgggatgatgagtccctctcgg
caggggaacaacatgatgggcctaggcagcaacacgtctgctgctaatcatagcaaagct
gccatggccgctgcctcttctggtggtgctaatgttggagggtttcagagatttccaggg
caaactcaacaacatccttcgggggctaccccaactctaaaccagctactgacatccccg
agccctatgatgcggggctatggcggtggctatcaagattacactaatccctctgctcaa
caacaacaatcaagcatggggctgaccaaagacataaacccccaatacggttcagttaca
catgtttggggaggacaacaaagaaatcaccctgccatgagccctggaaacaacggacaa
ggaagtggcagatcacaggtgccacccatggacgccatggccatgaagcgctctcagctc
tacggcataggcaacaacccttactcccagcaacaacagggcgggggcggttcttaccct
ggccagccatacggatcgccttctcctcaccgctatccaatgggaatgcacgggaggggt
caggtgggcatgagtggaatgcagtatcctcaacagcagcagcagatggtagcccagtat
ggacagcagcatcaggggcagcagggtgggtactgccagccgcagggccaatccccgtac
ttcagccctccccagcaacagcccaccgcccccacacagcccccctacatgcagccacgc
ccaccaccaccaccacaacaggatgtgtcacaggagggctatggcaacaggggccagtct
gctatgacccctgggaagcccaaccatgaggagatgggcctcagccagcaggacagacct
tccagtctacctgacctgtctggcaccatagatgaccttcctacgggcacagaggtggcc
gtcagctcagcggtcagtgcttcggggtccaccagcagccagggcgagcagagtaacccg
gcccagtcgccattctcaccccatgtatccccgcgcctccccggcctgcgcagcggcccc
tcgccctcccccgtgggatcacctgttggctcaagccaatcacgctctggcccaatctcc
cccgccagcgtcccaggcacccagatggccccccagacccctgggaacatgtctgatgtg
ggctcccattccaccctgagccagtcccccatgtctcaggagagagggttcccacctgcc
atgcaacggaacaccccaggcccccagcagtcgggccaggggccccccgtgtcccctcac
ccctccctggggggctccatgcacccgggctcctatcatcagcagcagcaggggggccct
ggcccctcgtacggatcccagaccagccagtacggcccccaaggtaactaccccaggccc
ccgaactacggcggggctcccagtgccaactacagcggccccggccctggcatgagcaac
agtttgggcatgaacgccagcagccccatgcatggccagggccccggacagccctgtggc
tccatgcccgccgggcgaggcttgggtccaggggccagcgggcgcccctacccctgtgcc
accaccaacaccatggcccccacctctcccagcatgccgcagcctgccggacagggtcag
ggcatgagaccgcccctgcccaacgttaaccgcaagccgggccacgaggcaggccccggc
cccaacgccatgcagggtccaaacgctggttccaacccctctgcccagggccggcaggga
atgacccccatgccgcaccaccctggcatgaaccccatgggccccggaggtgtgggcccc
agccctggaggcctctacagccagcagccaggagctaacacctctggaaggatgacccca
caggggccccacccgctctacaacgcacccccaccctcagggcccatgcagatgggagga
gaggggatggtgggtccccctgaccccaaacggaggcctccagagcagcacagggagggc
aacactcctgcccctgccgtcgaaccaccacctaaacccaaggaccgctacagctcctct
cagtgtatgtcccagccccccaccccatgtcccctgtcccccagccctgctagtctgtcc
tcttgtcatggggcgcaggacagcagagatatcattagcagccaccctgctggggcctgg
ccaaagacccccaccagccctaagcccagcccggccaccatgaccaatgagaagatccgc
atcctgtatgagatgggcggggagcccgagaggaggatgtgggtggaccgctacctggcc
ttcatggaggagaggggcacgcccgtacccatgctgcctgccgtgggcaagaagcccctg
gacctatgccgcctctatctgtctgtccgagagataggaggcctggctatggtgaacaag
agtaagaagtggagggagctgtctacccacctcaacgtgggcacgtccagcagctctgcc
agctctctgaagaagcagtacatccattacctgtttgccttcgagtgtaaagtggagcgg
ggagaggagccgccgctggagatcccgggagaaaccaagaaacaggcccaggcgcaccag
gctaggatccagccgccctcaccagccaactccggctccctacagggcccccataccccc
cagtctacaggcagcagctccatgagtgagatgccagagggtatgaagcgccccacccca
gccaccacaccccatggacacatgaccccacagccaggaaacaggaacagtggtggtatc
cgtgtccaggatcccttctcagagatcagtgaccctgccttccacaagcgagggcctatg
ccctctggcgccccctatcagcagagtggcggtagttcagacccctccatgaggatgcag
tacgacgccaacaaggacctctatggagggccccagaaagggccagggggcagtgagtcc
tatggaccaggtcagatgcccagcggtgccgtgcaggatatgtacccccgtggtcctccc
tcaggagccatgccagggatgggcatgggccccggcccgcggccacagtacccctacggg
cctggctacgacagaagaccagaccatgtgatgggtccagaggggggtatggctccccct
gggggtcagaacaatatgggaccttccagcggtgaccccagcatgtactctgccaacaga
taccctcagcagagaccacatggacatgagagttacgggcagcagcaataccctcacggc
cccatgccctacggctctcaccagcctggaatgtatccacagcaacagggctataagagg
ccagtaggaccagaggttatgtacggtccccctgctaagcgccatgagggtgaggcctac
ggcatgcagcagtacggaggacagcagccaggcatgtacagccagtacggagggaattac
atggggccagagcgcaggcccatgcagggccagtacccttacccctacagccgagaccgc
atgggggccacgcaggggccacagcaacacgccatgatgagtggtgggccccctgcttct
tccggagcctctgcagagggcccacagcttaacatgtggcaccccaggacagacatgggc
taccccgggccttaccgtggccaactgggccaggggcccccttaccctggtttgggacgg
ggcccgggggatgacccagagggaaggaactccccagatgggctgtggccccccggacct
ccaggccagcaccagcccccgtatccaccccactcctcctctgcctcctccatgccccca
atggcatccagacagcccacctcctcctaccaatccaaccccgccatggccaaccacatc
tctagagcccccagcccctcgcccttcccccggcccatggggggatccggacccctgtcc
cccaacaatgggggcccctacatggcatctctgaagaaggcagggatgcccggatccatg
ccaggctcactcggcggagggatgtcagggcagggcattctacctctccacagagatatc
agcttccccgtggggtcagtggaggccaccctgcccaaactcaaggcccgacgcagactt
acctccaaggagaccggaactccggaggcgtggcgcgtgatgatgtcccttaagtcaggt
ctgctggcggagagcacgtgggccctggacaccatcaacatcctgctgtatgacgacaac
actgtgtcctccttcaccctcgcacagttgcctggcttcctggagctgatcgtggagtac
ttccgccggtgcctgatctccatctttgggatcctggatgagtatgaggtgggcacagag
ggacagagaacgctgctaggaccaatcgcagaccaggaggaagagcctaccgttccagag
ctcggcagccaattacgcgaagagcagagggataacaggctagaagaggcggagatagag
aagcccacagccaatggcagcacagaggaggcggtcccagacgaaaagacggaggagcct
gtcgaggtgactgtgaaagaggagaaggtagaaggggaagaatctgaggtgggggcaacc
acagagcagtctgagcctccccagcccgaggggcccccagagccgaggcccaaacaggcc
agtaagtacgacaagctgcctatcaaggtggaggagaagagtgcggaggaggaccaggtg
gaggagcgccagggactcagcctgcccaggggcttcaactccggcctgctgcactggaag
gctggagggggggactccacggctcacatccaaacacacttcgagaaacgcagagaagag
acggacagcaagcatacagaggagaggaaggtggaagaaggggccgttgtagagaagacc
atgactgagacagccaccgtggacgatatgctgagtgcccgaccaggctctcagtctctg
tcagagaggaacgatcttactgggacgttctcctttgtaggaggggcgcagacccaaagc
cctatcttaaccctgctggaggacgagcctcgctgctgggacgaggcgcccctctccacg
gccgaaccctggcaggacgccctggcccgccgctgtgtctgcgtctccaacatcgtccgc
ggcctctccttcatcccagggaacgacaacgacatgtcccgccacccaggcctggtgctg
atcctggggcggctggtccttctgcatcacctgcacccccagaggaggaggacgcccccc
agctaccagagagaggaggagcagggccgggcctgcagcaaggacgagtggtggtgggac
tgtttgtcagccctcagggagaacactctggtcaccctggctaacatctcaggtcaacta
gacctgtccctctacccagagagcatctgtctgcccgtcctggacgggctgctccactgg
atggtgtgtccctctgccgaggcccaggaccccttcaccacggcgggctgctcctcctcc
ctcaccccccagagattggtgctggagtgcctgtgcaagctgagcatccaggacaacaac
gtggacctcttgctggccacgccgccgttcagccgccaggagaagctctacgccaccctg
gtgcgccacgtgggtgagcggaagtcccaggtatgccgggagatggcggtggctgtgctc
tctaacctggcacagggggacccgacggcggcgcgtgccatcgctctgcagaagggcagc
gtgggaacactcatcggcttcctggaggactgcgtggccatggcccagcaccagcaggga
ccccacagcctgttacacccagcaccagtccctcaccccgaaccccccagcgttaacatg
atgtgcagggccgccaaggctctgctggccatggccaaggtgaaggagaaccggccagag
tttgttctctacgagagcaggctactggatagctctctgtcctctgtgctgagctctgcc
gtggcggccatcatgtgtgaagtactgtttaagattggacgctcctcgtga
DBGET
integrated database retrieval system
