Oncorhynchus nerka (sockeye salmon): 115139706
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Entry
115139706 CDS
T07952
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A-like isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115139706
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
115139706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
ERCC3_RAD25_C
CUE
HHH_3
T2SSK
Na_Ca_ex_C
Motif
Other DBs
NCBI-GeneID:
115139706
NCBI-ProteinID:
XP_029533250
LinkDB
All DBs
Position
LG13:34412900..34435685
Genome browser
AA seq
1020 aa
AA seq
DB search
MSLFNLERFRFDKNKPTSNQDKYSGSVCPESGKENKPARVTTPVSNLGIPGQGVVFEDVI
SVTDDLASDSRSDKITQRVMEPVKESLKREVREMTETSDKEDKMDKDLEERLAKLQEIYP
QRDGKELLEVIKSTSTLDGAVASCLKFGDKDSTRKRKQDGSSSSQDSDVVPQPSKKRRSS
LPEDSEEGAEPSWERREAMVRKLQRKFPDQDKEELRSVLQEHEWNVDDALEVLRMFSDPD
EDSSAPEVSSSPEGKQKELNAKSNAKLSKAKSDAKPSRDRWESKDSKEEARRSNASALKW
LFKKPAPESRPNSSSSSSTSTSQKLSNGTSVAKKEASERKKKVRASYERASSSEDEDTEG
ASSEFEGEDDELDFVAEDAGTSTLKGQILSFFQEASLDELSLIAGCSLKKAQKIVELRPF
AVWQDLEEVFHKENGLSAELLLGCRVVLRERAVVQGLMSKCQTISGKMVKGVTQVIDKDM
GSMTQPSVLNRKLQLKPYQLIGLKWLLLLHQHKLNGILADEMGLGKTIQAIAFLGRLHQD
GIDGPHLITVPSSTLDNWVRELKLWCPCLKVLVYYGSVEDRRYLRHDILSNQVDFNVIVS
TYNLAIGNDSDRSLFRKLRLKYAVFDEGHMLKNMNSLRYRHLMAINAEHRLLLTGTPLQN
NLLELMSLLNFIMPSMFSSSTTQIAKMFSMKSHEEQSRFERDRIAQAKLIMKPFILRRVK
SEVLKQLPAKEERLEFCTMSEKQQLLYQNMVGKLKKSAIGEKKVLCNVMMQLRKMANHPL
LHRQYYTTERLEAMSHLMLKEPTHLDADPVLIQEDMAVMSDFELHRLCQQYSSLHKYQLE
KDLLLDSGKFHLLQTLLATLKTKGDRVVLFSQFTMMLDIVEILLKHLGHRYVRLDGSTPI
ADRIVLIDDYNMDPEIFVFLLSTRAGGLGINLTSANVVIMHDIDCNPYNDKQAEDRCHRL
GQTRTVQVIKLIHKDTIEGGMLQLGQKKLKLEQDMTAAEEGDEGTMSEDMAVLLKASLGL
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgagtctatttaatttagagcggtttcgttttgacaagaataaaccgacatcaaaccag
gacaaatacagcggttccgtatgtccagagtcgggaaaggagaataaaccagcccgagta
acaacacctgtatccaaccttggaatacctgggcaaggagtagtatttgaagatgtcatc
agtgtgactgacgatttggcaagtgactcgagaagtgataaaataacacaaagggtgatg
gaacctgtaaaggaatcactgaagcgagaggtaagagagatgactgagacatctgataag
gaagacaaaatggacaaggatctggaagagagactggccaaactgcaggaaatctaccct
caaagagacgggaaggagctgctggaggtgattaaaagcacaagcactttggatggcgcc
gtagcctcatgcctgaagtttggtgacaaagactcaacgcgaaagaggaaacaggatggc
tccagcagttcccaagacagcgacgtggttccgcagcccagtaagaagaggagatcgtct
ctgcctgaagactctgaggagggagcagagcccagctgggagagacgggaggccatggtc
aggaaactgcagaggaagttccccgaccaggataaggaggaactgaggtccgtgctccag
gaacatgagtggaacgtggatgacgccctggaggtgctgcgcatgttctcggacccagat
gaagactctagtgcacctgaagtatccagctcccctgaaggcaagcaaaaggaactgaat
gccaagagtaatgccaaactaagcaaagcaaagagtgatgccaagccgagcagagaccgt
tgggagtctaaggatagcaaggaggaggccaggcgaagcaatgcttccgctctgaaatgg
ctgttcaagaaacctgcacctgaatctaggcctaactcctcgtcctcctcttcgacttct
accagccagaagctctccaacgggaccagcgtggctaagaaggaggcgtcggagaggaag
aagaaggttcgtgcctcctacgaaagggccagcagctcggaggatgaggacacggaaggg
gccagcagtgagtttgagggcgaggacgacgagctagattttgtggcggaggatgcgggc
acatccacgctcaaaggccagatcctgagcttcttccaggaggcctcgctggatgagctg
tccctcatcgctggctgctcgttgaagaaggcccagaagattgtggagctacggcccttt
gctgtttggcaggacctggaggaggtgttccacaaagagaacggcctgtctgcagagctg
ctgctgggctgcagggtggtgctgagggagagagccgtggtccagggcctcatgtccaag
tgccagaccatctccggcaagatggtaaagggagtcacccaggtcatagacaaggacatg
ggctccatgacccagccctcagtcctcaacagaaagttgcagttgaaaccctaccagctg
attgggctgaagtggcttctcctgctgcaccaacacaagctgaatggaatcctggctgac
gagatgggtttgggaaagaccatccaagccatagccttcctgggcagactgcaccaggac
ggcatcgacggcccccacctcatcactgtgccctcctccacccttgataactgggttcgt
gagctaaagctgtggtgcccttgtctcaaggtgttagtctactacggctctgtggaggac
cggcggtacctgcgacatgacattctcagcaatcaggtggacttcaacgtcatcgtgtcc
acctacaatctggccatcggcaacgacagcgaccgcagtctcttccgcaagctcagactg
aagtatgccgtgttcgacgagggccacatgctgaaaaacatgaactccctccgttaccgc
cacctcatggccatcaacgcggagcaccggctgctcctgaccggcacccctctgcagaac
aacctgctggagctgatgtcgctgctcaacttcatcatgccctccatgttctccagcagc
accacgcagatagccaagatgttctccatgaaatcccacgaggaacagagtcgttttgag
agggaccgcatcgcccaggctaaactcatcatgaaacctttcatcctcagacgagttaag
agcgaggttcttaagcagctgccagcgaaggaggagaggctggaattctgcaccatgagc
gagaagcagcagctgctttaccagaacatggtgggcaagctcaagaagtctgccatcgga
gagaagaaagtgctgtgcaacgtgatgatgcagttgaggaagatggccaaccaccctctg
ctccaccggcagtactacaccacagagcgactcgaggccatgagtcacctcatgctcaag
gagccgacccatttggacgcggacccggtgctgatccaggaggacatggcggtgatgtcg
gactttgagcttcaccggctgtgccagcagtactcgtcgctgcacaaataccagctggag
aaagacctactgctggactccgggaagttccacctgctccagacgctactggccacactt
aagaccaagggagaccgggtggtactcttcagtcagttcaccatgatgctggacattgtg
gagattctgcttaaacacctgggccaccgctacgtccgactggatggctccacacccata
gcagacaggatcgtgctgattgacgactacaatatggacccggagatctttgtgttcctg
ctgtcgacgcgggcgggcggcctgggcatcaacctgacctcggccaacgtggtcatcatg
cacgacatcgattgtaacccctacaacgacaagcaggcagaggaccgctgccacagattg
ggccagactaggactgtccaggtgatcaaactgatccataaggacaccatagagggcggc
atgctgcagctgggccagaagaagctcaaactggagcaggacatgaccgctgccgaggag
ggtgatgagggcaccatgtctgaggacatggccgtcctcctcaaggcatcgctgggcctg
tga
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