Oncorhynchus nerka (sockeye salmon): 115139763
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Entry
115139763 CDS
T07952
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115139763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115139763
03036 Chromosome and associated proteins [BR:
one03036
]
115139763
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115139763
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115139763
PBAF complex
115139763
GBAF(ncBAF) complex
115139763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
115139763
NCBI-ProteinID:
XP_029533376
LinkDB
All DBs
Position
LG2:40271497..40285306
Genome browser
AA seq
822 aa
AA seq
DB search
MAVRKKDGGPNVKYFETSDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTRLPMKSFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEAKLLGKLKDIIKRHQQGSVTEDKTCSSHVVV
PIPASLEEEEWVRPVMKRDKQVLLHWGYSPDSYDTWISASEVEAAVEDPPSPEKPRKVHA
KWILDLDQFNEWMNEEDYEVGEGGPKRKRISAKTLTDEVTTPGDERRDKKPGSAKKRKRS
PSPSPTPTSQESKKKNTKKGPTTPYTKSKRGQREEEPEDLTKDLDEPSPVPAVEEVTLPK
TANTKKDSELTPVKGGTMTDLDEQEDESMETAEKEEEEGSPSVKGEPVKGSDLHEDNVTE
QTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQE
YLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPS
SLVPLQPKASQTPAAQQILSFPDKVKEKQPVDLQNFGLRTDMYSKKTGPPKSKTAANAMR
DWTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDMSSSLGPL
AYQPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRV
EEAARASGRQDPLYGLEGSGIAGTSLEEGDKPEESSEESKSDSQSSEEKRETKENKDGAM
EEDEKQGENGKKEEERGREGEGERDRESEKTETEMGNVYVCD
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaacgtaaaatatttcgaaacgtctgatacc
gtctcgcaattcgacaatgtccgcgtttggttgggcaagaattataaaaagtacatccag
gcggagccccccaccaacaagtctctgtccagcctggtggtccagctactgcagtttcag
gaggaggtgttcggacgacatgtcagcaacccacctctcaccaggctgccgatgaagagt
ttcctggactttaagtctggtggggctctctgccacattctggcagcagcctacaagttc
aagagtgatcagggctggcgcaggtttgactttcagaatccttctcggatggaccgcaat
gtggagatgttcatgactatcgagaaatccctggtacagaacaactgtctgagtcgacca
gtgatctacctgagctctgacattgaggccaagctgctggggaaactgaaggacataatc
aagaggcaccagcagggctcagtgactgaagacaagacatgcagctcccatgtggtggtt
cccatccctgccagtcttgaggaggaggagtgggtgcgtccggtgatgaagagagacaag
caggtgctgctccactggggatactctcctgacagctatgacacctggatctcagccagt
gaggtggaggcagctgtggaagatccgcccagcccagagaaacccaggaaggtccatgcc
aagtggatcctggacctggaccagtttaatgagtggatgaatgaggaggactatgaggtc
ggagaggggggccccaagaggaagaggatctcagccaagaccctgacggacgaggtgacc
accccaggggacgagcgccgggacaagaagcccggcagcgccaagaagaggaagcgctca
ccctccccctcgcccactccaacatcccaggagagcaagaagaagaacaccaagaaaggg
cccaccaccccgtacactaagtctaagcgaggccagagagaggaggagccagaggatctg
actaaagatctggatgaaccatcacctgtacctgctgtagaggaggtcaccctacctaag
acagccaacactaagaaagactctgagttgacaccagtgaaaggaggtaccatgacagac
ctggatgagcaagaggatgaatccatggaaactgcagaaaaggaggaggaggagggctct
ccgagtgtgaaaggagagccagtgaaagggtcggacctccatgaggacaacgtgactgag
cagacccaccacatcatcattcccagctacgctgcctggtttgactataacagtgtccat
gctattgagcgcagagccctcccagagtttttcaatggcaagaacaaatccaaaacccct
gagatttacctggcctacaggaacttcatgattgacacgtacaggctgaacccgcaggag
tacctcacctccaccgcttgtcgtaggaacctggccggagacgtgtgtgccatcatgagg
gtgcatgcattcttggagcagtggggtctgatcaactaccaggtggactcagagagccgg
cccacccccatgggccccccgcccacctcccacttccacgtcctggctgacaccccttcc
agcctggtgcccctgcagcccaaggcatctcagactccggcagcccagcagattctgtca
ttcccagataaggtgaaggaaaagcagccagtcgacctgcagaactttggcctgaggaca
gacatgtacagcaagaagactgggcctcctaagagtaagactgctgccaatgccatgcga
gactggaccgaacaggagacactactgctgctagagggtctggagatgtacaaggatgac
tggaacaaggtgtcagagcacgtgggctcacgtacccaggacgagtgtatcctgcacttc
ctgcgtctgcccattgaggacccatacctggaggacatgtcctcgtccctgggccccctg
gcctaccagcccgtccccttcagccaggcaggcaaccccgtcatgagcaccgtggccttc
ctggcctccgtggtggacccccgcgtggcctccgcagccgccaagtctgccctggaggag
ttttcccgtatgaaggaggaggtcccagcagcactggtggaggcccatgtgaggagggtg
gaggaggcggcgcgggccagtggcagacaggaccccctctacggcctggagggcagcggc
attgcaggcaccagcctggaggaaggagacaaacctgaagagagcagtgaggagagtaag
agtgacagccaatccagtgaggagaagagggagaccaaggagaataaagatggagccatg
gaagaggatgagaagcaaggagaaaacgggaagaaggaggaggagagagggagagaggga
gaaggagagagagaccgagagtctgagaagacagagacagagatgggtaatgtttatgtc
tgtgactga
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