Oncorhynchus nerka (sockeye salmon): 115140053
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Entry
115140053 CDS
T07952
Symbol
ttc28
Name
(RefSeq) tetratricopeptide repeat protein 28 isoform X1
KO
K24936
tetratricopeptide repeat protein 28
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
one03037
]
115140053 (ttc28)
Cilium and associated proteins [BR:
one03037
]
Motile cilia and associated proteins
Other motile cilia associated proteins
115140053 (ttc28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_7
TPR_1
CHAT
TPR_8
TPR_2
TPR_10
TPR_MalT
RPN7
TPR_16
TPR_14
TPR_6
TPR_NPHP3
PUB
TPR_9
TPR_19
HlyE
AP4E_app_platf
Wzy_C_2
Motif
Other DBs
NCBI-GeneID:
115140053
NCBI-ProteinID:
XP_029533957
LinkDB
All DBs
Position
LG13:complement(50983058..51203072)
Genome browser
AA seq
2379 aa
AA seq
DB search
MMKWQPRKKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPLRES
LEPTYQQLQKMKLDKSPFVVVSVIGQELLTAAHHTASVVVLEAALKIGTCSLKLRGSVFS
ALSSAHWSLGNAEKSTGYMQQDLEVSKTLGDQTGECRAHGNLGSAFFSKGNYREALTNHR
HQLVLAMKLKDREAASMALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDQLSEARELG
NMGAVYIAMGDFENAVQCHEQHLGIAKALNNKREEARAYSNLGSAYHYHRNFDKAMSYHT
HVLELAQELEEQPIEMRAYAGLGHAARCMQDLERAKQYHEQQLAIAEGLKDRAAEGRASS
NLGIIHQMKGDYETALKLHKTHLSITQELSDYAAQGRAYGNMGNAYNALGAFDQAVRYHR
QELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDVQSEARALG
NLGNFHCSRGEFPQAVPYYEQYLRLSPDLQDMESEGKVCHNLGYAHYCLGSYQDAVKYYE
QDLALAKDLHDKLSQAKAYCNLGLAFKALGDFTKAEECQKYLLSLAQSLNNAQARFRALG
NLGDIFVSKKDVTGAIQFYEQQLALAHQVKERRMEACAYAALGATYRLVQKYDKALGYHT
QELEVYQELGDVPGECKAHGHLAAVYMALGKYAMAFKSYEEQLELGRRLKDPGVEAQVYG
NMGITKMNVGVMEEAIGYLEQQLATLQQLSGNEAVLDRGRAYGNLGDCYEALGDFEEAIK
YYDQYLSVAQSLNRMQDQEKAYRGLGNGHRAMGNLQQSLVCFEKRLVVAHELGECGGKAQ
AYGELGALHSQLGNYEQAISCLERQLGIARDTQDRLLEGDASCGLGVVYQSMGEYETALR
CHQSDLEIAEETGRPARQGRAYGNLGLTYESLGNYERAVVFQEQHLSVAAQTNDLAAKTL
AYGSLGRTHHALQNYSQAVMYLQEGLRLAEQLARREDEAKIRHRLGLSLWASGNLEEAQH
QLYRASALFETIRHEAQHSTDYKLSLFDLQTSSYQALQRVLVSLGHHDEALAVAERGRTR
AFADLLVERQTGQQDSDPYTPVTVEHILDTVNSQRALVLYFSMAAGYLYSWLLAPGAGIL
KFHEVYLGEGVTEGGPDLHEGGGGGVASGSSLEQHIASAREALGVESYYSRGCSSSETES
EAGDLLDQQFEELNNKLNSVTDPTGFLRMVSRNNLFNRSCQSMTSLFSNTVSPAKDGCSS
LPRRPSNLNKPPLRALYDLLIAPMEGGLMHSSGPVGRHRQLILVLEGELYLIPFALLKGS
SSNEYLYERFSLIAVPSIQGLGISSKGHSRRAGPASCGGVSMAAVVGNPRLPSSVMDRWL
WGPMPSAEEEALMVSELLGCHPLAGSSATKERVMSALTQAECAHFATHISWKLAALVLTP
NPESIPGGAGAGVGTGGRGAGGGKRGSGGKGRKGSFGSSYTIPESLHLQDDGSDAESICD
SPPLQEFLLTAADILDLRLPVKLVVLGSYQESSSKVTADGVVGLTRAFLAAGAQCVLVSL
WPVPVSASKVFVHAFYTALLNGTKASAALADAMKTVQSSKQYSHPSNWAGYMLIGNDVKL
NSPSSLIGQALAEILQYPERARDALRVLLHLVEKSLQRIQNGQRNSMYTSQQSVENKVGG
VPGWHALLTAVGFRLDSAGTGIPAAVFFPTADPGDRLQQCSTTLQSILGLPPPALQALCK
LITASEAGEQLINRAVKNMVGMLHQVLVQLQTGEKEQDFSLLPIQVSISVQLWRLPGCHE
FLAALGFDLCEVGQEEVVLKTGKQANRRTMHFALQSLLALFDSTELPKRLSLDSSSSLES
LASAQFVSNPLPLGYPSLPFSPPCLDSLASDAISVYSLSSVASTMSFASKSECDFLGHRQ
RGGATAHFSAHKHPHIPRSRSSPHGAAAAAAGVGRGDDEEYEGFSIISSEPLGSHCDSLP
LPPGHGQRHLHRGGRGVVSSSSSGTGRGYQVSVSSRGSVSTPTSPVKTSLVPSPNPPLQK
VPGKVSSSDTGESDQSSTETDSTVKSQEEKTVPLDPQELAQKILEETQSHLRAVGSLQQA
GAEGAAAGASSARNSAFRSSETSAFSRPSSSASVRVQSSPRPKPPSRSSSLQKISSGYNS
PAASETSLKDGSHPSPTLDSHAQFKLKYPSSPYSGHISRSPSNVSPSSGHQSPACSAPSP
ALSYSSTGSACSSPADAPDLDRLRRGVIDEKVVAIHNLKTFWANTASQQQQQHLGPVRAL
RGAPGPLVSAKRDVLSLLNLSPRHCSPSDTQDSLELRELGLQSLDRGNKNPSNGHNPRKM
APSPSISTSSSPGARSIRLPAGNGYKFLSPGRFFPSSKC
NT seq
7140 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaatggcagccccggaagaaggcatacttccgacagggtgttgcccttcagtac
cttggtcgccatgccgacgcgttggccgccttcgcctcggggctggcccaagaccccaag
agcctgcagttactggttggcatggtggaggctgccatgaagtccccactacgagagtcc
ctagaacccacctaccagcagctgcagaagatgaagctggacaagagtccattcgtggtg
gtgtcagtgattggtcaggagctgctcacggcggcccaccacaccgcatctgtggtggtc
ctggaggccgcgttaaagatcggtacctgcagcctcaagctgcgtggctccgtcttctca
gccctcagcagcgcccactggtccctgggcaatgcagagaagagcaccggatacatgcag
caagacctggaggtttccaagacactaggtgaccaaacaggtgaatgccgtgcccatggc
aacctgggctcagcattcttctccaaggggaattaccgcgaggccctgaccaaccaccgc
caccagctggtcctggctatgaagctcaaggacagggaggcagcttctatggccctgagc
agcctgggtcatgtgtacacagccatcggggactaccctaatgccctggccagccacaag
cagtgtgtcctactggcaaagcaatccaaagaccagctgtcagaggcacgagagctgggc
aacatgggcgctgtctacattgctatgggcgactttgaaaacgctgtacaatgccacgag
cagcacctgggcatcgccaaggccctgaacaacaagagggaggaggcccgcgcctacagc
aacctgggcagtgcctaccactaccaccgtaactttgacaaggccatgtcctaccacacc
catgtgctggagctggcccaggagctggaggagcagcctatagagatgagggcgtacgct
ggactgggtcatgctgcacgctgcatgcaggacctggagagagccaagcagtaccatgaa
cagcagctggccatcgctgagggcctgaaggacagagctgcagagggaagagcctcctcc
aacctgggcattatccaccagatgaaaggagactatgagactgcacttaaactccacaaa
acccacctctccatcacccaggagctcagtgactatgctgcccagggccgggcctatggt
aacatgggcaatgcctacaacgcgctgggggcctttgaccaggccgtacgctatcaccgc
caggagctacagatctccatggaggtcaatgaccgggcctcacaggcctctacccatggt
aacctggccgtggcctaccaggccctgggggcccacgatcgtgccctgcagcactaccag
aaccacctcaatatcgcccgtgagctgcgagacgtccagagcgaggctcgcgccctcggc
aatctgggaaacttccactgctcccggggagagttcccccaagccgtgccctactacgag
cagtacctccgcttgtcccctgacctccaggacatggagagtgaggggaaagtctgccac
aacttgggctacgcccactactgcctgggaagctatcaggacgctgtcaagtactatgag
caggacctggctctggctaaggacctgcatgacaagctgagccaggccaaggcctactgt
aacctgggactggccttcaaggctctgggtgacttcaccaaggcagaggagtgtcagaag
tacctgctctctctagcccagtctcttaataatgcacaggcccgtttcagagccctgggc
aacctgggggacatctttgtctccaagaaggacgtgactggggctatccaattctatgag
cagcagctggccctggctcaccaggtgaaggagcgcaggatggaggcgtgtgcctacgcg
gccctgggtgccacctacagactggtgcagaagtacgacaaggctctgggctaccacacc
caggagctggaggtgtaccaggagctgggcgatgtgcctggggagtgtaaagcccacggc
cacctggcagccgtctacatggctctggggaagtacgccatggccttcaagagctacgag
gagcagctagagctgggccgcagactgaaggaccccggggtagaggcccaggtctatggc
aacatgggcatcaccaagatgaatgtaggggtgatggaggaggctataggctacctggaa
cagcagctggccaccctccagcagctgagtggcaacgaggccgtgctggaccggggtagg
gcctatggtaacctcggagactgttacgaggccttaggggactttgaagaggccattaaa
tactatgaccagtacctgtctgtggcccagagccttaaccggatgcaggaccaggagaag
gcctaccgaggcctggggaatggacacagggcgatgggtaacctgcagcagtccctggtg
tgttttgagaagcgtctggtggtggcccatgagctgggggagtgtggagggaaggcccag
gcctacggggagctaggggcgctccacagccagttggggaactatgaacaggccatctcc
tgtctggagcgccagctaggcatcgcccgtgacacccaggaccgcctactagagggcgac
gccagctgtggcctgggcgtggtctaccagtccatgggagagtacgagacggccctgcgc
tgccaccagagtgacctggagatcgcagaggagacgggcaggcccgcccgacagggccgt
gcctatggcaacctgggcctcacctacgagtcgctaggcaactatgagcgtgcagtggtg
ttccaggagcagcatctgagtgttgcagctcagaccaacgacctggcggccaagacccta
gcctacggcagtctggggaggacacaccacgcactgcagaactactcacaggctgtcatg
tacctgcaggaaggcctacgactggcagagcagctggctcggcgtgaggacgaggctaag
atccgccatcgtctggggctgtctctgtgggccagtgggaacctggaggaggcccagcac
cagctctaccgagcatctgcattgtttgagaccattcgtcatgaggcccagcacagcacc
gactacaaactttctctgtttgacctgcagacctcctcctaccaggcactccagagggtc
cttgtcagcctaggccaccatgacgaggcgttggcagtggcagagcggggtcggacgcgg
gcctttgctgacctgctggtggagaggcagacaggccagcaggactcagacccctacacc
ccagtcacagtggagcacatcctggacacggtgaacagccagagggccctagtgctctac
ttctccatggctgctgggtacctgtacagctggctgctggctccaggagcaggcatcctg
aagttccatgaggtgtacttgggagagggcgtgacagaaggcgggccagacctccatgag
ggcgggggagggggtgtggccagcggctcgtctctggagcagcacattgccagtgctcgg
gaggccctgggagtagaatcctactacagcaggggttgttccagcagtgagacagagagt
gaggcaggggacctgttggaccagcagtttgaggagctcaacaacaaactcaactctgtg
actgaccccacaggcttcctccgcatggtgtccagaaacaacctgttcaacaggagctgc
cagagtatgactagcctgttcagtaacaccgtgtccccagccaaagatggctgctcctct
ctgccccgccgacccagcaacctcaacaaacctcctctccgtgccctctacgacctgctc
atcgcacccatggaagggggcctgatgcattccagtggtcccgtgggtagacacagacag
ctgatattggtattggagggggagttgtacctcatccccttcgccctgctgaagggcagc
tcctctaatgagtacctgtatgaacgcttcagcctcatcgccgtgccctccatccagggt
ctgggaatcagctccaagggtcattctcggcgggcggggccggcttcctgtgggggcgtg
tccatggcagctgtggtgggtaaccctcgtctgccgtcctctgtgatggaccgctggctg
tgggggcccatgccctcggccgaggaggaggccctcatggtgtctgagctgctgggctgc
catccactggctggatcctctgccaccaaggagagggtgatgagtgccctcacccaagcc
gagtgtgcccacttcgctacccacatctcctggaagctggccgccctggtgctcacaccc
aacccagagagcatacccggcggggcaggggcgggtgtggggactggagggagaggggca
gggggtgggaagagaggcagtggaggcaagggcaggaagggctcgtttgggagcagctac
accatcccagagagcctgcacctgcaggatgatgggagcgacgctgagagtatctgtgac
agccctcccctgcaggagttcctgctcaccgctgctgatatactggacctgaggctgcct
gtcaaactggtggtgctgggctcataccaggagtccagcagtaaggtgacagcagacggt
gtggtaggtctgaccagagccttcctggctgctggggcccagtgtgtcctggtgtctctg
tggcctgttcctgtgtcagcctccaaagtgttcgtccatgccttttacaccgctctgctc
aacgggaccaaggccagcgctgccctcgcagacgccatgaagactgtccagagcagcaag
cagtactcccacccctccaactgggcaggctacatgctgattggtaatgatgtgaagctg
aacagcccctcgtccctgattggccaggcactagcagagatcctacagtatccagagaga
gcacgggatgctctgcgggtcttactgcaccttgtggagaagtctctccagaggattcag
aacggccagcgtaactccatgtacacgtcccagcagagtgtggagaacaaggtggggggc
gtcccaggctggcatgccctgctgaccgctgtgggcttccgcctggactcggctggcacc
ggcatccctgctgctgttttcttccccacagcagaccctggagacaggctgcagcagtgt
agcaccaccctgcagtcaatacttggtctaccgcccccagctctccaagccctgtgtaaa
ctcatcaccgcctccgaggcaggagagcagctcatcaaccgggctgttaaaaatatggtg
ggaatgctccaccaggtgctggtccagcttcagacaggggagaaggagcaggacttctct
ctgctgcccatccaagtgtctatcagtgtgcagctctggagactgccaggctgccatgaa
tttctggctgcactaggatttgacctgtgtgaggtgggtcaggaggaggtggtactgaag
acgggcaagcaagccaaccgccgcaccatgcactttgccctccagtccctgctggcactg
tttgactccacagagctgccaaagcgtctcagcctggacagctcgtcctccctggagtct
ctggcctcggcccagtttgtctccaaccccctaccactgggctaccccagcctgcccttc
tccccaccctgcctggacagtctggcctcagacgccatctccgtctacagcctgagctcc
gtggcctccaccatgagctttgcctccaaatcagagtgtgacttcctgggccatcgacag
cgtggtggggccacagcacacttttctgcccacaagcacccgcacattccccgcagtcgc
tcctctcctcacggggcggctgcagcagcagcaggtgtgggccggggagatgacgaggag
tatgaaggcttttccataatcagcagtgagcctctgggaagccactgtgactccctgcct
ctacctccgggtcacgggcagcgccacctccaccgtgggggcaggggtgttgtcagtagt
tccagctcgggcactggtaggggttaccaggtgtctgtgtcatctcgaggcagtgtcagc
acccccacctccccggtcaagaccagcctggttcccagccccaaccctcccctccagaag
gtgccaggcaaggtgagcagctcagacacaggtgagtcggaccagtccagcactgagaca
gatagcaccgtcaagtcccaggaggagaagactgtccctctggacccccaggagctggcc
cagaagattctggaggagacccagagccacctgcgggcggtggggagtttacaacaggct
ggggctgagggggctgcagctggagcttcctcagccaggaactctgccttccgctcctca
gagaccagcgccttcagccgtcccagcagcagcgccagtgtccgtgtccagtcctcccca
cgacccaaacctccctcccgctcttcctccctgcagaagatcagctctggttacaacagc
cctgcagcctcggagacctctctaaaggatggcagtcacccctcccctaccctggacagc
cacgcccagttcaagctcaaataccccagctccccctatagtggtcacatctcccgctct
cccagtaacgtgtcccccagctctggccaccagtccccggcttgtagtgccccatcccca
gctctctcctactcctccacgggctctgcctgctccagccctgccgatgccccagacctg
gaccgcctcaggaggggcgtcatcgatgagaaggttgtggccatccacaacctgaagaca
ttctgggccaacacagcgtcccagcaacagcagcagcatctgggtccagtccgggctctc
cgtggcgccccaggacccttggtctctgccaagagagatgtgctgagccttctgaacctc
tccccacgacactgctcccccagcgacacccaagacagcctggagctgcgggagctgggg
ctgcagtcgttggacaggggcaacaagaacccttccaatggacacaaccccagaaagatg
gccccctcgccctctatttccactagcagcagccctggtgctcgctctatcagactacct
gccggcaatggatacaagtttctctcccctggcaggtttttcccatcctccaaatgctga
DBGET
integrated database retrieval system
