Oncorhynchus nerka (sockeye salmon): 115140063
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Entry
115140063 CDS
T07952
Name
(RefSeq) rab5 GDP/GTP exchange factor-like isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04137
Mitophagy - animal
one04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
115140063
04137 Mitophagy - animal
115140063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115140063
Membrane trafficking [BR:
one04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
115140063
Protein recycling
Other Rab GTPase associated proteins
115140063
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Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
zf-A20
DUF5601
Mua
Rab11-FIP3
Motif
Other DBs
NCBI-GeneID:
115140063
NCBI-ProteinID:
XP_029533974
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All DBs
Position
LG13:51502826..51507619
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AA seq
474 aa
AA seq
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MAAEQQRGIRVTQAELLCKDACGYYGNPAWQGFCSKCWRERTRKAEADRQETGPHNDAGS
PLTFSKFEEKKNMEKGRKVNTMRRLFWGGPSPPKRPESSEGQVAILKAYQSSEPGDFTSF
LKLLRNPSSQRLQSRCTAFLNTMEAYHGLPVQKQSDLVQDFYQNIAVHFSNLSEIQVSQM
MEHMEKLIMTRLHKWVFCHDSCDDEVKDLALQRRIRSLNWVTPHMLRVPFPDERAEVVSD
PFLPAITAIIEMDAKRAPQDKLTCVCKCSQNVFQALSTSNSEPANADDYLSGLIYVVLKA
NPPRLHSNMQYVIRFGLPHSLMAGESGYYFTNLCCAVAFIEKLDGPALNLSPVEFEGYMQ
GRRAPSKRGSERQKMARETQDQLEDLKGRQEKVDQGINALKEQLQHWVQSVKSQLDEVTS
QSALTQEEIKAQSVFLQSHSVSTLTQADDVKDQSVLLLDGQESNNNTCLTEAEC
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagcagcaaagagggatccgagtcactcaagcagagcttctctgcaaggat
gcgtgtggttattatggcaaccctgcatggcagggcttttgctccaagtgctggcgagaa
cgaacccgtaaagcagaggcggacaggcaggagactgggccccacaatgatgcaggttct
cccctcaccttttctaaatttgaggagaagaagaatatggagaagggtcgcaaagtgaat
acgatgaggaggctcttctggggtggaccgtcccctcctaaacgcccagagtcttcagag
ggccaggtggctatattaaaagcctatcagagcagtgagccaggggattttaccagcttc
ctgaagctgctgaggaacccatcctctcaacgtctgcaatcccgttgcactgctttcctc
aacaccatggaggcttaccacggcctgccagtgcagaagcaatctgaccttgttcaagac
ttttaccagaacattgctgtgcatttcagtaatctttcagagattcaggtctctcagatg
atggagcacatggagaagctgatcatgacgcgtctgcacaagtgggtgttctgccatgac
agctgtgacgatgaagtgaaagacttggcactccagaggaggatacggtccttaaactgg
gtcaccccccacatgctgagggtgcctttccctgacgagagggctgaggttgtcagtgat
ccctttttgcctgctataacagccataatcgagatggatgccaagcgcgcgccacaggac
aagcttacatgcgtatgtaagtgcagtcagaatgtcttccaggctctctccacttccaat
agtgagccagcaaatgctgacgactacctgtctggcctgatttacgtagtactaaaggcc
aacccaccccggcttcactccaacatgcagtatgtgatccgcttcggcctccctcacagc
ctgatggcaggagagagtggctactacttcaccaatttgtgttgtgcagtggccttcatt
gagaagctggatgggccagcactcaacctaagcccagtggagtttgagggctacatgcag
ggtcgccgtgctccctcaaagaggggcagtgagaggcaaaagatggccagggagacgcaa
gaccaactagaggacctgaagggtcgacaggagaaggtggaccaaggaataaatgccctc
aaagagcagctacagcattgggtacagtctgtcaagtcacagctagatgaggtaacatcc
cagtctgctctgacacaagaagaaattaaagcccagtcagtgtttttgcaaagccattct
gtctctactctaacacaggcagatgatgtcaaagaccagtcagtgttgttgctagatggt
caagagtccaacaacaacacttgtctaacagaggcagagtgttag
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