Oncorhynchus nerka (sockeye salmon): 115140147
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Entry
115140147 CDS
T07952
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115140147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115140147
03041 Spliceosome [BR:
one03041
]
115140147
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
115140147
Spliceosome [BR:
one03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115140147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
115140147
NCBI-ProteinID:
XP_029534157
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Position
LG13:53807441..53837980
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AA seq
713 aa
AA seq
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MSDALKKRKSKVLRSEMGTPEVKRGRGEGDQDVRVYSEEVELDGRDPEEDYQQYKLTCEA
LAQLMNDIQELKANGAKDGCAEVEQKRMQSCIHFMSLKKLNRLAHMRLKRGRDQTHEGKQ
RVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSVDEFYQEAPPEVSRTPLTKD
DTHQLTLARLDWELEQRKRLAEQYKESLSSKEKIQKGIEVKKEHLSSLQPGLNAIMQASL
PVQEYLSMPFEQTQRQTEIARHLPTSLYVLLVQASAYGQACDKSLSVSISGDVDEAKALS
KPPEDSQDDDSGDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLRCKDGSV
LHLFFYYLMNLNIMTVKAKVSTATDLTGAISAGCVRVCACVCVWSLGSACVSVCLVMILF
SARELLNSGTLLNCLYANDQGCETPNPSNRYQFDKVGISSFGDYVAELGHPYLWVQSLGG
LKFPSDAPEGLHAGSSLSASHMESTMKLLRGRVLSRLALHKQFSSLEHSIVPVSSECKHL
FPAKVLSRLARWTTITHQEYTNLVFTQHVSEAGLARETDLFFMAVLERGTARLQAAVVLN
PRYPVISPLFAVSISWKGERSGRTDDNLRAMESEVNVFKSELQGPCPGHQLLTNQVARLG
VCLDVYLETDGQDDSVEGPREFPREKMCLRTVRGPNRLKPFKYNHPQGFFSHR
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgccctgaagaagcgcaagtcgaaggttctccgcagcgagatgggcacaccg
gaggtgaaacgtggccgtggagagggggaccaggatgtacgtgtgtatagtgaggaggtg
gagctggatggcagggacccagaggaggactaccagcaatataaactaacctgtgaagct
ctggcccaactgatgaacgatatccaggagctgaaagccaacggcgccaaggatgggtgt
gctgaggtagaacagaagaggatgcagagctgtatccactttatgagtctgaagaaactc
aaccgcctggctcacatgagactgaagagggggagagaccagacgcatgagggcaagcag
agagtagatgtgttgcacctgcagctccagaacctgctctatgaggtcatgcacctgcag
aaggagattagcaagtgtctggagttcaagtcaaagcatgaggagatagatcttgtgagt
gtagatgagttctaccaggaggccccccctgaggtatcccgcactcccctcaccaaggac
gacacccaccaactcacgctggccaggctggactgggaactggagcaaaggaagaggctg
gctgagcagtacaaggagtctctctccagtaaggagaagatccagaaaggcattgaggtg
aagaaggaacacctgagttctctacagcctggactcaacgctatcatgcaggcatccctc
ccagtccaggagtatctctccatgccgtttgaacagacccagagacagacagagatcgcc
cgccaccttcccacctctctctatgtcctactggtacaggccagtgcttacggacaggcc
tgcgataagagtctgagtgtgtccatcagtggagatgtggacgaggccaaagctctgtct
aaacctccagaggactcccaggatgatgattctggggattctgatgcagaggaggaacag
gagaaaacgaagaggaggagacctactacaggtggacagctggatgataagagacgtgaa
atgctgaagagacaccctctctccctctgcctagacctcagatgcaaagacggcagtgtg
ctgcatctgttcttctactacctgatgaacctgaacatcatgactgtcaaggccaaagtc
tccaccgccacagatctcactggagccatcagcgccgggtgcgtgcgtgtgtgtgcttgc
gtgtgtgtgtggagtttggggagtgcgtgcgtgtctgtctgtcttgtaatgattctattt
tctgccagggagctgttaaactctggcacgctgctcaactgcctgtatgccaacgaccag
gggtgcgaaacgcccaacccctctaatcgctaccagtttgataaagtggggatcagttca
tttggagactacgtggcagaactgggtcatccctacctgtgggtgcagagtctgggagga
ctgaagttccccagtgacgccccagagggtttgcatgcaggcagttctctgagtgccagt
cacatggaaagcaccatgaagctgctgagaggacgagtcctgtcacgcctggccctgcac
aaacagttctcctcactagagcacagtattgttccagtgtccagtgagtgcaagcacctg
ttccctgctaaggttctctctcgcctggctcgctggactaccatcacacaccaggagtac
acgaatctggtgttcacgcagcatgtgtcagaagcaggtctggctcgggaaactgacctc
ttcttcatggccgtgttggagagaggaacagctcgtcttcaggctgcggtggtgttgaac
ccccgttacccagtcatttctcctctctttgctgtctcaatcagctggaagggggagcgc
agtggacgtactgacgacaaccttcgagccatggagagtgaggtgaacgttttcaaatca
gagctccaggggccctgcccaggccaccagctgctgaccaatcaggtagctcgtctgggt
gtctgtctggatgtgtacctggaaactgatggacaggacgacagcgtggagggaccacgg
gagttccccagagagaagatgtgtctacgcactgtcaggggtccgaaccgtctgaagcca
ttcaagtacaaccacccccagggcttctttagtcaccgctga
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