Oncorhynchus nerka (sockeye salmon): 115140179
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Entry
115140179 CDS
T07952
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04142
Lysosome
one04144
Endocytosis
one05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115140179
04142 Lysosome
115140179
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
115140179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115140179
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115140179
Membrane trafficking [BR:
one04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
115140179
Exosome [BR:
one04147
]
Exosomal proteins
Proteins found in most exosomes
115140179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
ChpXY
Gp18_dom_I
capSnatchArena
IFS
Motif
Other DBs
NCBI-GeneID:
115140179
NCBI-ProteinID:
XP_029534218
LinkDB
All DBs
Position
LG13:complement(54941393..54976239)
Genome browser
AA seq
1682 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGEQNQVVIIDMADPNN
PSRRPISADSAIMNPTSKVIALKEAAKCLQIFNIEMKSKMKAHTMTEEVMFWKWISVNTV
ALVTEAAVYHWSMEGDSQPIKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAAFGEFKVEGNTKASTLFCFAVRSQAGGKLHIIEVGHPATG
NQPFTKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHLYDLESGVCIYMNRIS
AETIFVTAPHEPTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLGLRMAMRSNLAG
ADELFARKFNTLFAQGSYSEAAKVAASTPKGILRTAETIRKFQSVPGQPGQASPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECCEELGDLVKAVDPTLALSVY
LRANVPSKVIQCFAETGQFQKIVLYAKKVGYSPDWVFLLRNVMRVSPEQGLQFSQMLVAD
EEPLANINQIVDVFMEGSLIQQCTSFLLDALKNNQPAEGHLQTRLLEMNLLHAPQVADAI
LGNQMFSHYDRAHIAQLCEKAGLLQRALEHYTDLFDIKRTLVHTHLLNPEWLLNFFGALS
VEDSIECLRAMLSANIRQNLQLCVQVASKYHEQLGTNALVDLFESFKSFEGVFYFLGSIV
NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPDRVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLKENTF
YDSTVVGKYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWANV
LEENNPSRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFAVNT
SAIQVLIEHISNLDRAYEFAERCNEAAVWSQLARAQLQRDLVKEAIDSYIKADDPSAYME
VVSAASKNDNWEDLVKFLQMARKKARESYVETELIFALAKTGRLAELDEFVNGPNNAHIQ
QVGDRCFEEGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCFA
CVAGEEFRLAQICGLHIVIHADELEELISDYQDRGYYEELIALLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQCHLWAELVFLYDKYEEYDNAVLTMM
SHPTDAWKEVQFKDIIAKVANVELYYKSLSFYLDYKPLLTNDLLTILSPRLDHSRAVTYF
TKMNQLKLVKPYLRSVQSHNNKGVNDALNNLLTEEEDYQGLRASIDAYGNFDTIVLAQRL
EKHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDAMLYAAESKDAELAETLLQWFLE
EGRKECFAACLFASYDLLHPDVVLELAWRHNIMDSAMPYFIQVMREYLTKVDEVAEKVDK
LEESESQRKTEEKVPEPTPIVFGQQLMLTAGSAPVAPQPGYPGGYGYTAPGYPTQPPYSY
NM
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgccgatacgatttcaggaacatctgcagctgcagaacctaggggtg
aatccggccaacatcgggttcagctacctgaccatggagtctgacaaattcatctgcatc
cgggagaaggtgggtgagcaaaaccaggtggtgatcatagacatggctgaccccaataac
cccagcaggcgacccatttctgctgacagcgccattatgaaccctacaagcaaggtcatc
gccctgaaagaggctgctaagtgcctgcagatcttcaacattgagatgaagagtaagatg
aaggctcacaccatgacagaggaagtcatgttctggaagtggatctctgtcaacaccgtc
gccttggtgactgaagcggccgtctaccattggagcatggagggggactctcagccaatc
aaagtgtttgatcggcacgccagtctggccggttgccagatcataaactacagaacagac
gaacagcagaagtggcttctgcttatcggtatctcggcacagcaaaaccgtgtggtgggg
gccatgcagctgtactctgtggacaggaaggtgtcccagcccatcgagggacatgctgca
gccttcggagagtttaaggtggagggcaacaccaaagcctccactctcttctgctttgct
gtgcgcagccaggctggtggcaagctgcatatcatagaggtgggtcacccggctacaggg
aaccagccatttaccaagaaggcggttgatgtgttcttccctcctgaggcgcagacagac
ttccccgtcgccatgcagattggcaccaagcatggcgtgatctacctgatcactaagtat
ggctacatccacctgtatgatctggagtcgggagtgtgtatctatatgaaccgcatcagc
gctgagaccatcttcgtcactgccccccacgaacccacctccggcatcatcggggttaac
aagaagggacaggtgttgtcagtgtgtgtggaggaggagaacatcgttaactatgccacc
aacgtgctgcagaacccagacctgggcctgaggatggccatgcgttctaacctggccggg
gcagatgagttgtttgccagaaagttcaacacgctgttcgcccagggttcctactccgag
gctgccaaggtggctgcctccacaccaaagggtatcctgcgtacagcggagaccatccgt
aagttccagagtgtgccaggccagccgggccaggcctctcccctgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtg
ctacaacagggacgcaagcagctgctggagaagtggctgaaagaggataagctggagtgt
tgtgaggagcttggtgacctggttaaggcagtagatcctactctggccctcagcgtctac
ctcagggccaacgtacccagcaaggtgatccagtgcttcgctgagaccggacagttccag
aagatagtgctttacgccaagaaggtgggctactctccagactgggtgtttctgttgagg
aatgtgatgcgggtcagtccagaacagggtctacagttctctcagatgctggttgcagat
gaggagcccctggccaacatcaaccagatagtggatgtgttcatggagggcagtctgatc
cagcagtgtacctcattcctattggacgctctgaagaacaaccagccagccgagggacac
ctacagacacgcctactggaaatgaacctcctccatgctccccaggtggccgatgcaatc
ctgggaaaccagatgtttagtcactatgaccgagcccacatcgcccagctgtgtgagaag
gctgggctgctgcagagggctctagagcactacactgacctgttcgacatcaaaaggact
ctcgtacacacacacctgctcaaccctgagtggctgctgaacttctttggcgccctgtca
gtagaggactcgatagagtgtcttcgggccatgttatcagccaacatccgacagaacctt
cagctgtgtgtccaggtggcatctaaataccacgaacagctgggaacaaatgccctggtg
gatctcttcgagtccttcaagagctttgagggtgtgttctacttcctgggttccatagtg
aactttagccaggaccccgacgttcattttaaatacatccaggcggcctgtaagaccgga
cagatcaaggaggtggaacgcatctgtagagagagcaactgttacgacccggacagggtc
aagaacttcctcaaggaggctaaactgacagaccagctgcctctgatcatagtgtgtgac
cgctttgactttgtccatgacctggttctctacctctaccgcaacactctgcagaagtac
attgagatctatgttcagaaggtgaaccctagccggctgccggtggtgataggaggtctg
ttggatgtagactgtgctgaagatgtcattaagaacctgatcttggtggtgagaggacag
ttctccacagacgagctggtggcagaggtggagaagaggaacagactgaagctgttgttg
ccgtggctggagtctcgtatccacgagggctgtgaggagccggctactcacaatgccttg
gctaagatctacatagacagtaacaacaacccggagcgcttcctgaaggagaacaccttc
tacgacagcactgtagtggggaagtattgtgagaagagagacccccacctcgcctgtgtc
gcctatgagaggggccagtgtgacctggaccttatcaaggtgtgcaatgagaactccctg
ttcaagagtgaggctcgctacctggtcagacggaaagacccagaactatgggccaatgtt
ctagaggagaacaacccttctagacgccaactcatagaccaggtggtgcagacagctctg
tcagagacccaggacccagaggaggtatcggtgactgtcaaggcctttatgacagctgac
ctgcccaatgagctcatcgaactactggagaagattgtactggacaactccgtcttcagc
gagcaccgaaacctccagaacctgttgatcctgacggccatcaaggcagaccggacacgt
gtgatggagtacatcaaccgcctagacaactacgacgccccagacatcgctaacatcgcc
atcagcaacgagctcttcgaggaggccttcgccatcttcaaaaagtttgccgttaacacc
tccgccattcaggttctgatcgagcatatcagtaacctggacagagcctatgagtttgca
gagcggtgtaatgaggctgctgtatggagtcagctggccagagcccagctccagagagac
ctggttaaagaagccatcgactcctacatcaaagctgacgacccgtcagcctacatggag
gtggtcagcgcggccagcaagaacgataactgggaggatctggtgaagttccttcagatg
gctcgtaagaaggcccgggagtcctacgtagagacagaactcatctttgctctggctaaa
actggcagactggccgaactagatgagtttgttaacggccctaacaatgcccatatacaa
caggtgggagataggtgttttgaggagggcatgtatgatgctgccaagctgctgtataat
aatgtgtccaactttgcccgcctggcgtccacgctggtccacttaggagagtaccaagct
gctgtggacagcgccaggaaagccaacagcacacgcacctggaaggaggtgtgttttgcg
tgtgtggctggggaggagtttcggttggctcagatctgtggtcttcacatcgtcatccac
gctgatgaactggaggagctcatcagtgactatcaggaccggggctattatgaggagctg
atagccctgttggaggcagcattgggtttggagcgcgctcacatgggcatgttcacagag
ctggccatcctctactccaaattcaaaccccagaagatgagagaacatctggaactcttc
tggtcccgtgtcaacatccctaaggtgctgcgagcggcggagcagtgccacctgtgggcg
gagctagtgtttctgtatgataaatacgaggagtatgacaatgctgtcctcacgatgatg
tcacaccctactgacgcatggaaggaggtgcagttcaaggacatcatcgccaaggtggcc
aatgtggagctgtactacaaatccctttccttttacctggattacaaacctctgctgaca
aacgaccttctaaccatactgtcaccacggttagaccacagccgggcggtcacatacttc
accaagatgaaccagttgaagttggtaaagccttacctgcggtcagtccagagtcacaac
aacaagggagtcaacgatgccctcaataacctactgacagaggaggaggactaccagggt
ctgagggcatcgatcgatgcgtatggtaactttgacaccattgttctggcccagagactg
gagaagcatgagctgattgagttcagacgcatagcagcatacctctacaaaggcaacaac
cgctggagacagagcgtggaactctgcaagaaggacaaattatacaaggatgcaatgctg
tatgctgccgagtctaaggatgcagagttggctgagaccctgctgcagtggttcctggag
gagggtaggaaggagtgtttcgctgcctgtctgtttgcctcctatgacctgctgcaccct
gatgtggtgctggagctggcctggagacacaacatcatggactctgccatgccatacttc
atccaggtcatgagggagtatctcaccaaggttgatgaggttgcggaaaaggtggacaaa
ctggaggagtcagaaagccaaaggaagactgaggaaaaagtcccagaacccacccccata
gtgtttggtcaacagctgatgttgacagcaggttccgctccagtggctccccagccagga
tatccaggaggctatggatacactgctccaggctaccccacccagcccccctacagctac
aacatgtag
DBGET
integrated database retrieval system
