Oncorhynchus nerka (sockeye salmon): 115140231
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Entry
115140231 CDS
T07952
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115140231 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115140231 (prpf40a)
Spliceosome [BR:
one03041
]
Complex A
U1 snRNP components
U1 related factors
115140231 (prpf40a)
Complex B
115140231 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
115140231
NCBI-ProteinID:
XP_029534362
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Position
LG1:complement(11324798..11363801)
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AA seq
891 aa
AA seq
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MSSDGNNGQSQAPPFAGVPTSGMPPPFMGPPGMPPHYPPMGIPPMGQRPPNMAPMPPGMM
PPGMMPPMGQIPGMMPPMMPGMMMPPHMSAAAMQPTGPPGVDTTVTAAPGTVGTTNGTPQ
DDQPKKKSVWTEHKSMDGKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCPWKEYKSDNGK
AYYYNSQTKESRWTKPKELEDLEAMIKAEENGTSEVGAPCAVIAPTLQPDSAAVMATMMM
EMPVMMPITTVLEEQMSQVPMHVAEVSAEVPVNSTEEAVGMEASASNDASKDERPELVKK
TYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAFNAYKV
QTEKEEKEEARLKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVPERDRLE
IYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAED
EELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQ
LHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKNFLVEVNTSFEDFGSVISSDKRAMTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEATFKSMLKQATPALEPEATWEGVRERFLKESAFEDVTLESERKRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSRSRSGSESDGEDDYHNKKKKRSQSKSPSE
RSSSGESERSYKKSKKHKKKGKKRRHKSQSPESEGERKDKGRERDSKREKDQEKEKESDK
SRGKSRSDSKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatggtaataatggccagagccaagcacctccttttgctggggtcccaacc
tcaggcatgccaccgccttttatgggaccaccgggaatgccgcctcattacccaccaatg
ggaattccacccatgggacagaggcctcccaacatggctcccatgccacctggcatgatg
ccacctggcatgatgccaccgatgggacagataccaggcatgatgccacctatgatgccc
gggatgatgatgccccctcacatgtctgctgcggcgatgcagccaacaggaccgcctgga
gtggacacaactgtcactgctgcgcctggaacagttggtaccacaaatggcacgccacag
gatgaccaaccgaagaagaagtctgtgtggacagaacacaagtccatggatgggaagacc
tactactacaacaccgagaccaagcagtcttcctgggagaagcctgatgacttgaaatct
cctgcagaacaaatgctgtcaaaatgcccatggaaggagtataaatcagacaatggcaag
gcgtactactacaactcccagactaaggagtcccggtggaccaaacccaaagagcttgaa
gatctagaagccatgataaaagccgaggagaatgggacatcggaggtaggcgctccttgc
gctgtaatcgcccccacccttcagcctgacagtgctgctgtcatggcgaccatgatgatg
gaaatgccggtcatgatgccgattacaacagttttggaggaacagatgtcccaggtgccc
atgcatgtagcggaggtcagcgctgaggtgcctgtgaactccacagaagaagcggtcggc
atggaggcctcagccagtaatgacgcttcgaaggatgagaggccagagctggtgaagaaa
acgtacaagtggaacacgaaagaagaggccaagcaggcctttaaagagctcctgaaggag
aagggcgtttcatccaatgcgtcgtgggaacaagccatgaaaatgatcatcaatgaccca
cgctacagtgccctgcccaaattaagcgagaaaaagcaggccttcaatgcttacaaggtg
cagacagagaaagaagagaaggaggaggccagactcaaatacaaggagtccaaggaaacg
tatcagagatttttggagaatcacgagaaaatgacatctaccaccagatacaagaaagca
gagcagatgtttgcagagctggacgtgtggagcaccgtcccagagagagaccgactggag
atctatgaagatgtcctattctacctggccaagaaggagaaggagcaagccaagcagctg
aggaagaggaactgggaggcgctgaagaacatcctggacaacatggccaacgtgacctac
cgcaccacctggtccgaggcacagcagtacctgctggacaaccccaccttcgctgaggac
gaggagctccagaacatggacaaggaggatgctctgatctgtttcgaggagcacatccgc
gcgctggagaaggaggaggaggacgagaagcagaagactttgctgagggagaggaggaga
cagcgcaagaacagagagtccttccagaaattcctggacgagctccatgaccacggtcaa
ctccactccatgtctgcctggatggagatgtaccccaccgtcagctcagacatccgcttc
gccaacatgctgggccagccagtttatggtgtctattctgcaggctccactcccctcgat
ctgttcaagttctatgtggaagacctgaaggctcgctaccatgacgagaagaggatcatt
aaggatatcctgaaggacaaaaacttcctggtggaggtcaacactagctttgaagacttt
ggctctgtgatcagctcagacaagagagccatgacgctggacgcaggcaacatcaagctg
gccttcaacagtttgctggagaaggcagaggctcgggagagggagcgggagaaggaggag
gccaggaagatgaagaggaaagaggctacctttaagagcatgttgaagcaggccaccccg
gccctggaaccagaggccacctgggagggggtccgagaaaggttcctcaaagaatctgcg
ttcgaagacgtgactctggagtctgagaggaaaaggatattcaaagacttcatgcatgtc
ttggagcacgagtgccagcatcatcactccaagaccaagaaacattctaagaagtccaag
aagcaccaccggaagcgctcccgctcccggtctcgatcgcgatcgggctcggagtctgat
ggtgaagacgattatcacaacaagaagaagaagcgctcacagtccaagtccccgtccgag
cgttcctccagcggtgaatctgagagaagttataagaagtccaagaagcacaagaagaag
ggaaagaagaggcgtcacaagtcgcagtctcctgaatctgaaggcgaacgaaaagataaa
ggaagagagagggacagcaagcgtgagaaggaccaggagaaggagaaagagagcgacaag
tcccgggggaagagtcgctctgactccaagcagaagtctcctaaaaggaaatctaccaag
gaggagggtggctgggacacatcaggcagcgagctgagtgaaggagagctggagaagagg
aggaggactctactagaacagctggatgctccttaa
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