Oncorhynchus nerka (sockeye salmon): 115140297
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Entry
115140297 CDS
T07952
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1 isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115140297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115140297
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115140297
mRNA degradation factors
5'-3' decay
Lsm complex
115140297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
115140297
NCBI-ProteinID:
XP_029534466
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Position
LG13:complement(62480539..62484649)
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIDDIDKKHLVLLRDGRTLIGFLRSIDQFANLVFHQTIERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDIDKLCDNVLQQVSIEEILEEQRLQQQAKQKTEKAKVTALKDR
GLSIPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactacatgccagggaccgcgagtctcatcgatgacatagacaaaaagcatcttgta
cttcttcgagatggacgaacgctaattgggtttctgagaagcattgaccagtttgccaac
ctagtttttcatcaaacaatcgagcgcatccatgtgggcaagaagtttggagacatcccc
agaggaatcttcattgtgagaggagagaatgttgttttgcttggagaaatagacattgat
aagctgtgtgacaacgtcttgcagcaagtttctatagaggagatcctggaggagcagcga
ttgcaacagcaagccaagcagaagacagagaaagccaaggtgaccgcactgaaggacaga
ggcctatccatccccaaggcagataatctcgatgaatactga
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