Oncorhynchus nerka (sockeye salmon): 115140841
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Entry
115140841 CDS
T07952
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115140841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115140841
03036 Chromosome and associated proteins [BR:
one03036
]
115140841
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115140841
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115140841
mRNA degradation factors
5'-3' decay
Decapping complex
115140841
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115140841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
115140841
NCBI-ProteinID:
XP_029535113
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All DBs
Position
LG14:complement(1936979..1952685)
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AA seq
486 aa
AA seq
DB search
MSTARTENPTSIMGLNKPNGQFRGPLKPVGLTPGSLATTPQPDAHQKGGNIPQGSGGIRF
GDDWKKCLQLPQKDCRFRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQISIQVS
KHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLSKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKGLYVAEFHSAETDAEDEIRGKD
GELSAA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagcaagaacagagaacccaacatccataatgggactgaacaagcccaacggg
cagtttagaggaccactcaagccagttggactaacaccaggatccctggcaactacccca
caaccagatgcccaccagaagggaggcaacattccccagggcagtgggggcatccgtttt
ggcgatgactggaagaagtgcctgcagcttccacagaaggactgcagatttagaacatca
gatgtgacatcgaccaaggggaatgagttcgaagactactgcctgaagcgggagctactg
atggggatctttgagatgggctgggaaaaaccatctcccgtacaggaggagagcatcccc
attgctctgtcaggaagggacatccttgcccgggctaagaacggcaccgggaaaagcgga
gcctacctcattcctctcctggagaggatagacctgaagaaggaccacatacaggctatg
gtgatggttcctacacgagagttggccctgcaggtgagccagatcagcatccaggtgagc
aagcacatgggtggggtcaaggtcatggccaccacgggaggcaccaacctgagggacgac
atcatgcgcctggacgagactgtgcatgtggtgatagccacaccaggcaggatccttgac
ctgataaagaagggcgtggccaaagtggacaaagtccagatgatggtgatggatgaggca
gacaagctgctgtctcaggactttgtggtcctcatcgaagacatcatcagcttcctggct
aaggggcgtcagatcctactctactctgccaccttccccatcagtgtgcagaagttcatg
gcgaagcacctttcaaagccctatgagatcaacctgatggatgagctgacactgaagggc
atcacccagtactatgcctacgtcactgagaggcagaaagtccactgcctcaacaccctc
ttctccaggctccagatcaaccagtccatcatcttctgtaactccacccagcgggttgag
ctgctggccaagaagataacccagctgggctactcctgcttctacatccacgccaagatg
atgcaggagtacagaaaccgtgttttccatgacttcagaaacggactctgcaggaacttg
gtctgcacagatctgttcaccaggggaattgacatccaagcagtgaacgtagtgatcaac
tttgacttccccaagaatgctgagacatacttgcatcgcatcggcagatcagggaggttc
ggtcacctgggtctggccataaacctgatcacctctgaggaccgcttcaacctgaagtcc
atcgaggaccagctggtgaccgacattaagcccatccccggcagcatcgacaagggcctg
tacgtggcagagttccactctgccgaaacagacgccgaagacgagatccgaggcaaggac
ggcgagttaagtgcagcataa
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