Oncorhynchus nerka (sockeye salmon): 115140911
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Entry
115140911 CDS
T07952
Name
(RefSeq) LIM domain-containing protein 1-like
KO
K16682
LIM domain-containing protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115140911
03036 Chromosome and associated proteins [BR:
one03036
]
115140911
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115140911
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
115140911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
115140911
NCBI-ProteinID:
XP_029535227
LinkDB
All DBs
Position
LG14:complement(6061472..6094046)
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AA seq
665 aa
AA seq
DB search
MDKYDDLDLEASKFLEDLNMYEASRDGLFRMKRDAGNNSDFEETRRVFASKMTKIHIQKQ
QEEIAKNNLAVRMNGGHNRAADSTFYTKDRPPINSYRTAGETAAKPPILSGPLPGTASGA
SQYAPYDALKHHSPSQQPYSYGNNYDNKDRFEPHSYHHALSPTSPGNAPTHASGHPASPS
VTWASYSSSPGGSSGLMCSPPQQPPHHSPCPSFSDSLPSPSSTRLHQSKAASLLVRQRPP
MVAGAAADWMRSLGNPELIAPLPLSAFTGGADLYQHLSPQPAPVTPPTVPYSAAPCMVPR
PNANQGNLRQNGLSQSPVALTPSPTPAQGAVPTPPVHPSEAAQPKATTGAYFPASASPSG
TSVSRSFGQGQGIGQAQGRQVAMGVDVPSGLDSQLSSGGEACQLQHQPQSLKLPCQTLHV
QPEQGPSAAEIKLEALTKRLEKEMDAQPKADYFGSCVKCNKAVYGATAACQAMGSLYHDV
CFTCSACSKRLRGKAFYYVGGKVFCEEELPGKIYSGFQQSADKCNACGHLIMDMILQALG
KSYHPGCFRCVICNDSLDGVPFTVDTENKIYCVKDYHRVLAPKCAACNQPILPSEGSDET
IRVVSMDKDYHVECYHCEDCQMELNDEEGHRCYPLDGHLLCHTCHLKHIEPGCASPTAAS
YQHQF
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggataaatacgacgatttggatcttgaggcaagtaaatttttagaagacctcaatatg
tatgaggcatctagggacgggttgttccgaatgaagagggatgcagggaacaactccgac
tttgaagaaaccaggagggtttttgcctccaaaatgacaaaaatccacatacagaaacag
caagaggaaatagccaaaaacaatttggcagtgagaatgaacgggggtcacaacagagcg
gcagacagcacgttttacactaaagacaggccgcctatcaatagctacagaacggcagga
gaaactgcggccaagcctcccatactctctggccctttgccaggcaccgccagtggcgcg
agtcagtacgcgccctatgacgctctgaaacaccattcacccagtcaacagccatacagc
tacggaaacaattacgataacaaggaccgttttgagccgcattcttaccaccacgccttg
agtcccaccagcccagggaatgcacccacacatgcttctggtcaccctgccagtccctct
gtcacttgggcctcttactcttccagccctggtggatcatcagggcttatgtgcagccca
cctcagcagcccccacaccactcaccatgtccctccttctccgacagcctaccatctccg
agctccactagactacaccagagcaaggctgcctctctactagtgcggcagagacccccc
atggtggctggggctgcagcagactggatgcggagcttggggaacccagagctgattgca
ccgctccctctgagtgccttcactggcggagctgatctgtaccagcatctgtctccacaa
cctgcccctgttacaccgccaacagtcccttactcagcagcaccctgcatggtcccaaga
ccaaacgccaaccagggaaatctacgccagaatgggctctctcagagtcctgtggctctc
actcccagccccacccctgctcaaggggctgtcccaaccccacctgtacacccatctgag
gcagcccagcccaaagccactactggagcttacttccctgcctctgcctctccctctgga
accagtgtctctagaagctttggccagggtcaaggtataggccaggcacagggcaggcaa
gtggccatgggggtggatgtgccctctggcctagacagccagctgtcctctggtggtgag
gcttgccagctccaacaccagccccagtctctcaaactgccctgccagactctccatgtc
cagccggagcaggggccgtctgcagccgagatcaaattagaagccctgaccaagcgtctg
gagaaggagatggacgcccagcccaaggcagactacttcgggagctgtgtgaagtgtaac
aaggcggtgtacggagccactgcggcctgccaggctatgggaagcctctatcatgatgtc
tgcttcacctgcagcgcctgcagtaaaaggctacgggggaaagcattttactacgtcggt
gggaaggtgttctgtgaagaggaacttcctggtaagatatattctggattccagcagtct
gcagacaagtgtaacgcatgcggacatctgatcatggatatgatcctgcaggcccttggg
aagtcctaccaccctggctgtttccgttgtgtcatctgtaacgacagtctggacggagtg
cccttcactgtggacacagagaacaagatttactgtgtcaaagactaccacagggtcttg
gcccccaaatgtgcagcatgtaaccagcccattctgccttcagagggctctgatgaaacc
atccgagtggtatccatggataaagactaccacgtggagtgctatcactgtgaagactgt
cagatggagctgaacgacgaggaggggcaccgctgctacccgctggacggccacctcctc
tgccacacctgccacctgaagcacatcgagccgggctgcgcctcgcccaccgctgcctcc
taccagcaccagttctag
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