Oncorhynchus nerka (sockeye salmon): 115140968
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Entry
115140968 CDS
T07952
Name
(RefSeq) thrombospondin-3a-like
KO
K04659
thrombospondin 2/3/4/5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04145
Phagosome
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115140968
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115140968
09144 Cellular community - eukaryotes
04510 Focal adhesion
115140968
09142 Cell motility
04820 Cytoskeleton in muscle cells
115140968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115140968
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115140968
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115140968
Membrane trafficking [BR:
one04131
]
Endocytosis
Phagocytosis
Opsonins
115140968
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115140968
Exosomal proteins of colorectal cancer cells
115140968
Exosomal proteins of bladder cancer cells
115140968
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115140968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_MSP1_1
EGF_3
cEGF
Motif
Other DBs
NCBI-GeneID:
115140968
NCBI-ProteinID:
XP_029535364
LinkDB
All DBs
Position
LG14:complement(8588398..8603401)
Genome browser
AA seq
955 aa
AA seq
DB search
MGARRDMPTFLALSTFLFIATCEPMDKQDMQVIDMLTLDSKTSVSAVEKVTGAMSVLSDI
YIVSTFRLPPKMGGVLLGLYSKEENKKYLELAIMGKINKALVRYVREDGKIHTVNLQSTN
LADGRTHSIILRVGGLRRDNLHLELYVNCRLADSSQGLPPLVPLSAEKVEIRNGFKAYAR
LQGAVESLKMALGGSVAKAGTLADCPFQGDSSVYNTVGATAEVNSILGDHTKALIGQLII
FNQILGELREDIREQVKEMSLIRNTILECQVCGFHDSRSPCSPNPCFKGVSCMETFDYPG
YRCGPCPEGMMGNGTHCQDIDECSIAQPCYSPGACINTVKGFSCELCPPGLWGPPLFGVG
LEYAKYHKQECVDIDECIEVANACVPHSMCTNTIGSFRCGGCKVGYLGNQTVGCVPRRSC
ATLSFNPCDANAHCIIERNGEVSCACNIGWAGNGNTCGTDTDIDGYPDRSLPCMDNDKHC
KQDNCVYTPNSGQEDADNDGIGDQCDEDADGDGIKNVEDNCRLEPNKDQQNSDTDSFGDA
CDNCPNVPNIDQKDTDSNGQGDACDNDIDGDGIPNVLDNCPKVPNPMQTDRDGDGVGDAC
DSCPEISNPMQTDIDNDLVGDVCDTDQDTDGDGHQDSRDNCPDHPNSSQLDSDNDGLGDD
CDDDDDNDRIPDIQDNCRLITNPNQKDSNSNGVGDVCENDFDNDSVWDLIDVCPESSEVT
LTDFRAYQTVILDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFH
INTVTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQSTPFRAMAQPGLQLKAVKSRTGPG
EYLRNALWHTGDTNEEVKLLWSDPRNVGWRDKTSYRWQLSHRPQVGYIRVKLYEGTEIVA
DSGVVIDTTMRGGRLGVFCFSQENIIWSNLRYRCNDTVPDDFNPYRKQVLLHIKV
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgaggcgcgatatgccaacttttctggctctatccacatttctattcattgca
acatgtgagccaatggataagcaagatatgcaagtcattgacatgctaacgctggactcc
aagaccagtgtgtctgcggtggagaaggtgacaggtgccatgagtgtgctcagtgacatc
tacatcgtgtccacattccgcctgcctcccaagatgggaggggtgctgctgggcctctac
agcaaagaggagaacaagaagtacctggagctggccatcatgggaaagatcaataaagct
ctggtgcgttacgtgagggaggatggcaaaattcacacagtgaacctccagagcacaaac
ctggctgatggtcgcacacactccattattctccgggttggaggcctgcgcagagacaac
ctacacctggagctctacgtcaattgtcgattggctgactccagccagggcctccctcca
ttggtccctctctctgcagagaaggtggagattcgtaatggcttcaaggcctacgcaagg
ctacagggcgctgtggagtccctcaaaatggcgctagggggcagtgtggccaaagcaggt
accctggcagactgtccattccagggggattcatccgtttacaacacagtcggtgcgact
gcagaagtgaactccattctaggtgaccacactaaggctctgattggtcagctaatcatc
tttaaccagatcctaggggagctgcgagaggacatcagagagcaggtgaaggagatgtcc
ctgattaggaacaccattctggagtgccaagtgtgtggcttccacgactctcgttccccc
tgctcccccaacccctgttttaagggtgtttcctgcatggagacctttgactacccaggg
taccgctgtggtccctgcccagagggcatgatgggcaacggaacccactgccaggacatt
gacgagtgttccatagcccagccctgctactctccaggtgcctgtataaacacagtgaag
ggttttagttgtgagctctgcccccctggtctctggggcccacccctctttggggtcgga
ctggagtacgccaagtaccacaagcaggagtgtgtagacatcgatgagtgtattgaagtt
gccaatgcctgtgtgccccactccatgtgtaccaacaccatcggctcgttcaggtgtggt
ggctgtaaggtgggttacctggggaaccagacagtgggctgcgtgccccgtaggtcctgt
gccacactcagctttaacccttgtgatgccaacgcccactgcattatagagaggaatgga
gaggtgtcctgtgcgtgcaacattggctgggccggtaatgggaacacttgtggcacagac
acagacattgatggatacccagaccgctctctgccctgtatggacaatgacaagcactgt
aaacaggacaactgtgtttacacacccaactcaggccaggaggacgcagacaatgacggc
atcggagaccagtgtgacgaggacgcagatggggacggcatcaagaatgtggaggataac
tgtcgactagaacccaacaaagatcagcagaactcggacacagactctttcggtgacgcc
tgtgacaactgtcccaatgtccctaacattgaccagaaggatacggacagcaacgggcaa
ggagacgcctgtgacaatgacatagatggagatggtatccccaacgtgctggacaactgc
cccaaggtccccaaccccatgcagacagacagggacggagacggggtaggagacgcctgc
gacagctgccctgagatcagtaaccccatgcagacggacattgacaatgacctggtggga
gatgtgtgtgacactgaccaggacacggatggggacggtcaccaggactccagggacaac
tgccctgaccatcccaacagctcccagctggactcggacaacgatggccttggggacgac
tgtgacgatgacgatgacaatgacaggatcccagacattcaagacaactgcagacttatc
accaaccccaaccagaaagattctaacagtaacggggtgggcgacgtgtgtgagaacgac
tttgacaacgattcagtctgggatctgattgatgtgtgccctgagagttcagaggtcact
ctgacagacttcagagcctatcagacagtcattctggatccagagggtgatgcccagatc
gatcccaattgggtggtgctcaatcagggcatggaaatagttcagaccatgaacagtgat
cctggtttagctgtgggctacacagcgttcaacggggtggactttgagggcaccttccac
atcaacacggtgacggacgacgactatgcaggcttcatcttcggctaccaggactcctct
tccttctacgtggtgatgtggaaacagacagagcagacctactggcagtcgacacccttc
cgggccatggcccaacctggcctgcagctcaaagcagtgaagtcccgtacagggcctggt
gagtacctgcgcaacgccctgtggcacacgggggacaccaacgaggaggtgaagctgctg
tggtcggacccacggaatgtgggctggagagacaagacgtcttaccgctggcagctcagc
cacaggccccaggtgggctacatcagggtgaagttatatgaggggacggagattgtggct
gactctggcgtggtgattgacactaccatgagaggcgggcgactgggtgtcttctgtttc
tcccaagagaacatcatctggtccaacctgcgctaccgctgcaacgacactgttccagac
gacttcaacccatatcgcaaacaggtcctgctgcacatcaaagtgtga
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integrated database retrieval system
